Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00163 | ATGAACTTCAAGAATTTTGGGTATACTCCGCCTGCTGAAAACAGCTATTCAAGTGGTGGAAGATTGCTGGGGGATTTTCCGTTGACAAAACAATTGTCGATCTATTCGCTGACGATTGATGAATTACAGAGCACCTTGGGAGGAGGGATGGAGAAGGACTTTGGTTCCATGAATATGGATGAGCTATTAAAGAATATTTGGAGTGCCGAAGAGACACAACCCATGGTATCGTGTAGCACTGCAGCTGCACAACAAGGTTGTGGGAATTCTAGTGTGTATTTACAAAAGCAAGGCTCCTTGACACTGCCTCGAACACTCAGCCAGAAGACGGTGGAAGAGGTGTGGAGGGATTTATCAAAAGTAGATGATTTAGGGAAAGGCGGAAATGGTGGTGTTTTGTCTAATGATATTCCACAGAGACAACAAACCTTGGGGGAGATGACTTTGGAAGAGTTCTTGTACAAAGCTGGTGTTGTGAGAGAGGACAACCATTTTACAGAAAAGACTAATAATAATGGTGGATTTTTTGGCAACGGAAATTGTTCAGGAATCGATTTTCAGAAGCCAGATTCGAACAAACTATTAGTAGGTAATAGAATTGCAGATACCAACAGTCAAATGTCAATTCTGTCTTCAAATTTACCTTTAAATGTTAATGGGGTTAGAACGAATCATCAACAACAGAAGATTTTCCCCAAACAACCTACTGTAACATATGGACAACTGCCTTTATCAAGTAGTGGTGCTCAGTGGGAAAATCCAAGAGAGGCAATTGCAAATTTTGCAGATCACGGCTTGAATTCCGCTGCAAGCCAAATGTCTACCGTGCAAAGTGGAGGTACAGGAGTGATTGGCTTAAAAGGTGGGCATGTTAATGTTGAAAGAGTATCTCCAGGAAACCAAGTTTTATCAGATGGAATTCGGAAGAGTAATGGCGATATCTCTTCCATCTCATCCGTACCTTACATGTTTAATGGCGGAGTAAGAGGGAGGAGGTCAAGTGGGACAGTGGAGAAGGCTGCAGAGAGGAGACACAAGAGAATGATTAAAAACAGAGAATCTGCAGCAAGGTCTCGAGCCCGCAAGCAGGCTTACACAACGGAACTGGAAGCTGAAGTTGCAAATCTGAAGGAGGAGAACGGAGCATTGCAGAAAAAACAGGTGCTTTAG | 1170 | 42.82 | MNFKNFGYTPPAENSYSSGGRLLGDFPLTKQLSIYSLTIDELQSTLGGGMEKDFGSMNMDELLKNIWSAEETQPMVSCSTAAAQQGCGNSSVYLQKQGSLTLPRTLSQKTVEEVWRDLSKVDDLGKGGNGGVLSNDIPQRQQTLGEMTLEEFLYKAGVVREDNHFTEKTNNNGGFFGNGNCSGIDFQKPDSNKLLVGNRIADTNSQMSILSSNLPLNVNGVRTNHQQQKIFPKQPTVTYGQLPLSSSGAQWENPREAIANFADHGLNSAASQMSTVQSGGTGVIGLKGGHVNVERVSPGNQVLSDGIRKSNGDISSISSVPYMFNGGVRGRRSSGTVEKAAERRHKRMIKNRESAARSRARKQAYTTELEAEVANLKEENGALQKKQVL | 389 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1410423 | 1411977 | - | Bma018609.3 | Bma04g00163 | 80532 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00163 | 389 | SMART | brlzneu | 339 | 388 | IPR004827 | GO:0003700|GO:0006355 | |
Bma04g00163 | 389 | Gene3D | - | 341 | 388 | - | - | |
Bma04g00163 | 389 | SUPERFAMILY | Leucine zipper domain | 343 | 386 | IPR046347 | GO:0003700|GO:0006355 | |
Bma04g00163 | 389 | Pfam | bZIP transcription factor | 341 | 386 | IPR004827 | GO:0003700|GO:0006355 | |
Bma04g00163 | 389 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 346 | 361 | IPR004827 | GO:0003700|GO:0006355 | |
Bma04g00163 | 389 | Coils | Coil | 359 | 386 | - | - | |
Bma04g00163 | 389 | CDD | bZIP_plant_BZIP46 | 343 | 389 | - | - | |
Bma04g00163 | 389 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 15 | 387 | - | - | |
Bma04g00163 | 389 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 341 | 386 | IPR004827 | GO:0003700|GO:0006355 | |
Bma04g00163 | 389 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 15 | 387 | IPR043452 | GO:0003700|GO:0045893 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g02274 | Bma04g00163 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g02233 | Bma-Chr1:79375887 | Bma04g00163 | Bma-Chr4:1410423 | 0 | dispersed | |
Bma03g00516 | Bma-Chr3:4008581 | Bma04g00163 | Bma-Chr4:1410423 | 9.85E-68 | dispersed | |
Bma04g00163 | Bma-Chr4:1410423 | Bma08g00802 | Bma-Chr8:45625488 | 4.65E-53 | dispersed | |
Bma09g00176 | Bma-Chr9:6528742 | Bma04g00163 | Bma-Chr4:1410423 | 2.14E-06 | dispersed | |
Bma05g01395 | Bma-Chr5:53358736 | Bma04g00163 | Bma-Chr4:1410423 | 9.60E-14 | transposed | |
Bma01g02274 | Bma-Chr1:79881660 | Bma04g00163 | Bma-Chr4:1410423 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57115 | PF00170 | bZIP_1 | 2.00E-12 | CL0018 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00163 | K14432 | - | jre:118343674 | 391.734 |