Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00170 ATGTCCACAAGGGGTGATCATCATACCGTCCCACTCTCAGTTTTGCTTAGACGTGAATTGGCTAGTGAGAAGATCGAGAGACCAGAAATTCTACACGGCCAGGCTGGTCAGAGTAAAAAAGGGGAAGATTATACGTTGCTAAAGTCAGACTGTGAGAGAGTGGTTGGCGATGGGGTCTCTACTTATTCTGTTTTTGGGCTATTTGATGGACACAATGGGTCTGGAGCTGCTATTTACACCAAGGAAAATCTCTTTAACAACATTCTTGCTGCTATTCCTTCTGATCTCAACAGAGATGAGTGGGTTGCGGCATTGCCTAGGGCTTTAGTTGCAGGCTTTGTAAAAACAGATAAAGATTTTCAGGAGAAAGCACGAACATCTGGGACGACTGTCACTTTTGTGATTATAGAAGGATGGGTCATAACTGTTGCATCTGTTGGGGATTCTCGTTGCATTCTTGAAATTGGCCCTTTGAGATGTTGGCCTGGTGGTTTATGCCTTTCACGGTCTATTGGTGATGTGGATGTTGGTGAATACATTGTTCCCGTGCCATATGTAAAGCAAGTGAAGCTGTCTACTGCTGGTGGTAGGGTCATTCTCTCAAGTGATGGTGTTTGGGATTCTTTGTCAGCTGAAGCGGCTTTTGATTGCTGTCGTGGACTTCCTGCAGAAGCAGCAGCTGCGCAAATAGTCAAGGAAGCTTTACAAGCTAAGGGACTTCGAGATGATACTACATGCATTGTCATTGACATATTATCTCATGATAAACTAGCTCCTCCTTTACCACCACCAAAGAAGCCGGTTAAAGGAGTATTCAAATCCATGTTCCGCAAAAAGCCTTCTGAATCATCATCTAATGCTGACAAAGAATATATTGAGCCTGATGTAGTCGAGGAATTGTTTGAGGAAGGGTCTGCTATGCTATCAGAGAGGTTAGACACGAAATATCCTCTCTGCAACATGTTCAAGTTGTTTATGTGTGCAGTTTGCCAAGTAGAGATCAAACCTAGAGAGGGTATATCAATACATGCTGGGACATCTAAGAGAGGAAAAATGCGTCCTTGGGATGGCCCTTTCCTATGCATGAGTTGCCAGGAGAAAAAGGAAGCCATGGAAGGAAAGAGACCATCAGGAGGTGTTTCATCTCTCTCTCTATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGAGTGTGGGTTTGGATATAACTAA 1500 44.93 MSTRGDHHTVPLSVLLRRELASEKIERPEILHGQAGQSKKGEDYTLLKSDCERVVGDGVSTYSVFGLFDGHNGSGAAIYTKENLFNNILAAIPSDLNRDEWVAALPRALVAGFVKTDKDFQEKARTSGTTVTFVIIEGWVITVASVGDSRCILEIGPLRCWPGGLCLSRSIGDVDVGEYIVPVPYVKQVKLSTAGGRVILSSDGVWDSLSAEAAFDCCRGLPAEAAAAQIVKEALQAKGLRDDTTCIVIDILSHDKLAPPLPPPKKPVKGVFKSMFRKKPSESSSNADKEYIEPDVVEELFEEGSAMLSERLDTKYPLCNMFKLFMCAVCQVEIKPREGISIHAGTSKRGKMRPWDGPFLCMSCQEKKEAMEGKRPSGGVSSLSLYMCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVLECGFGYN 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1449456 1455908 - Bma018617.1 Bma04g00170 80539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00170 499 CDD PP2Cc 36 251 IPR001932 -
Bma04g00170 499 SUPERFAMILY PP2C-like 34 251 IPR036457 -
Bma04g00170 499 SMART PP2C_SIG_2 54 251 IPR001932 -
Bma04g00170 499 ProSiteProfiles PPM-type phosphatase domain profile. 24 251 IPR001932 -
Bma04g00170 499 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 3 154 - -
Bma04g00170 499 SMART PP2C_4 21 249 IPR001932 -
Bma04g00170 499 Pfam Protein phosphatase 2C 57 153 IPR001932 -
Bma04g00170 499 Pfam Protein phosphatase 2C 165 234 IPR001932 -
Bma04g00170 499 Gene3D - 31 155 IPR036457 -
Bma04g00170 499 PANTHER ALPHABET, ISOFORM E-RELATED 3 154 - -
Bma04g00170 499 PANTHER ALPHABET, ISOFORM E-RELATED 159 380 - -
Bma04g00170 499 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 159 380 - -
Bma04g00170 499 Gene3D - 156 257 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00627 Bma04g00170 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00170 Bma-Chr4:1449456 Bma14g01907 Bma-Chr14:40766803 1.60E-142 dispersed
Bma01g00627 Bma-Chr1:5679783 Bma04g00170 Bma-Chr4:1449456 7.85E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00170 - - mnt:21386903 640.958