Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00171 | ATGGTGATGGGTGACGAATCATACGAAGAATGCCGTCGAAAGAGAGTGGAGGAGAATAAGAGAAGAATGGAAGCCCTCAACCTACCCCGCCTCTCTTTGACTTTTCGAAATCGCAAAGCTTCTTCTCTTAAGCCCTCCCCTGTGAAGAAGCCGCTTTTAATGGAGAAACAACGGGTGCTGGTGAGGAGATCAAGTCGCGTAGCGAAAAGTCCAGCTCCTGTTTATGCAGAAGTTCGTCTTGATCGTCTATCAATACCTAGAAGGATTTCTAAGAGTAGGGATTTTTCAGATCGAGTATATGTTTCGACTCCGGCAAGGAAGGAAGCTATTGACAAAGCTGAACAGCTGCAATCTGAATTAGACCCCCAATTTCCCACCTTTGTTAAGCCAATGCTTCCATCTCATGTCAGCGGGGGTTTTTGGCTGGGCCTTCCAGCTCAATTCTGCAAAATGTGCCTTTCAAAACAGGATGGGGTTATGACTTTGATAGACGAAGAAGGAGGAGAATCTCAAACAATATACTTAGCCAGAAAGACTGGACTTAGTGGTGGATGGAAGGGGTTTTCAGTTGATCATGGGTTGGCTGATGGAGATGCTTTAGTTTTTCAATTAATCAAACCCACAGCTTTTAAGGTCAATATAACACTAATCCCACTTCCTTTTCTTTGCCAATATAAATTTTATTGTAATCCCATTTCTTCTACTTCTTCTCAGGTGTACATAGTTAGAGTGAATAGTTCTGAATAA | 747 | 42.7 | MVMGDESYEECRRKRVEENKRRMEALNLPRLSLTFRNRKASSLKPSPVKKPLLMEKQRVLVRRSSRVAKSPAPVYAEVRLDRLSIPRRISKSRDFSDRVYVSTPARKEAIDKAEQLQSELDPQFPTFVKPMLPSHVSGGFWLGLPAQFCKMCLSKQDGVMTLIDEEGGESQTIYLARKTGLSGGWKGFSVDHGLADGDALVFQLIKPTAFKVNITLIPLPFLCQYKFYCNPISSTSSQVYIVRVNSSE | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1458228 | 1459400 | - | Bma018618.2 | Bma04g00171 | 80540 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00171 | 248 | Gene3D | - | 101 | 217 | IPR015300 | - | |
Bma04g00171 | 248 | Pfam | B3 DNA binding domain | 127 | 215 | IPR003340 | GO:0003677 | |
Bma04g00171 | 248 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 6 | 215 | IPR044837 | - | |
Bma04g00171 | 248 | SUPERFAMILY | DNA-binding pseudobarrel domain | 120 | 214 | IPR015300 | - | |
Bma04g00171 | 248 | ProSiteProfiles | B3 DNA-binding domain profile. | 127 | 218 | IPR003340 | GO:0003677 | |
Bma04g00171 | 248 | SMART | B3_2 | 127 | 220 | IPR003340 | GO:0003677 | |
Bma04g00171 | 248 | CDD | B3_DNA | 125 | 214 | IPR003340 | GO:0003677 | |
Bma04g00171 | 248 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 | 6 | 215 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g00521 | Bma-Chr3:4031750 | Bma04g00171 | Bma-Chr4:1458228 | 8.25E-12 | dispersed | |
Bma04g00171 | Bma-Chr4:1458228 | Bma15g00925 | Bma-Chr15:33292108 | 1.00E-19 | dispersed | |
Bma04g00171 | Bma-Chr4:1458228 | Bma04g00184 | Bma-Chr4:1565955 | 3.09E-08 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57116 | PF02362 | B3 | 3.10E-13 | CL0405 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00171 | - | - | zju:107420903 | 283.108 |