Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00171 ATGGTGATGGGTGACGAATCATACGAAGAATGCCGTCGAAAGAGAGTGGAGGAGAATAAGAGAAGAATGGAAGCCCTCAACCTACCCCGCCTCTCTTTGACTTTTCGAAATCGCAAAGCTTCTTCTCTTAAGCCCTCCCCTGTGAAGAAGCCGCTTTTAATGGAGAAACAACGGGTGCTGGTGAGGAGATCAAGTCGCGTAGCGAAAAGTCCAGCTCCTGTTTATGCAGAAGTTCGTCTTGATCGTCTATCAATACCTAGAAGGATTTCTAAGAGTAGGGATTTTTCAGATCGAGTATATGTTTCGACTCCGGCAAGGAAGGAAGCTATTGACAAAGCTGAACAGCTGCAATCTGAATTAGACCCCCAATTTCCCACCTTTGTTAAGCCAATGCTTCCATCTCATGTCAGCGGGGGTTTTTGGCTGGGCCTTCCAGCTCAATTCTGCAAAATGTGCCTTTCAAAACAGGATGGGGTTATGACTTTGATAGACGAAGAAGGAGGAGAATCTCAAACAATATACTTAGCCAGAAAGACTGGACTTAGTGGTGGATGGAAGGGGTTTTCAGTTGATCATGGGTTGGCTGATGGAGATGCTTTAGTTTTTCAATTAATCAAACCCACAGCTTTTAAGGTCAATATAACACTAATCCCACTTCCTTTTCTTTGCCAATATAAATTTTATTGTAATCCCATTTCTTCTACTTCTTCTCAGGTGTACATAGTTAGAGTGAATAGTTCTGAATAA 747 42.7 MVMGDESYEECRRKRVEENKRRMEALNLPRLSLTFRNRKASSLKPSPVKKPLLMEKQRVLVRRSSRVAKSPAPVYAEVRLDRLSIPRRISKSRDFSDRVYVSTPARKEAIDKAEQLQSELDPQFPTFVKPMLPSHVSGGFWLGLPAQFCKMCLSKQDGVMTLIDEEGGESQTIYLARKTGLSGGWKGFSVDHGLADGDALVFQLIKPTAFKVNITLIPLPFLCQYKFYCNPISSTSSQVYIVRVNSSE 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1458228 1459400 - Bma018618.2 Bma04g00171 80540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00171 248 Gene3D - 101 217 IPR015300 -
Bma04g00171 248 Pfam B3 DNA binding domain 127 215 IPR003340 GO:0003677
Bma04g00171 248 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 215 IPR044837 -
Bma04g00171 248 SUPERFAMILY DNA-binding pseudobarrel domain 120 214 IPR015300 -
Bma04g00171 248 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677
Bma04g00171 248 SMART B3_2 127 220 IPR003340 GO:0003677
Bma04g00171 248 CDD B3_DNA 125 214 IPR003340 GO:0003677
Bma04g00171 248 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 6 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00521 Bma-Chr3:4031750 Bma04g00171 Bma-Chr4:1458228 8.25E-12 dispersed
Bma04g00171 Bma-Chr4:1458228 Bma15g00925 Bma-Chr15:33292108 1.00E-19 dispersed
Bma04g00171 Bma-Chr4:1458228 Bma04g00184 Bma-Chr4:1565955 3.09E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57116 PF02362 B3 3.10E-13 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00171 - - zju:107420903 283.108