Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00176 ATTATGCTTCGTCTCTGTTTCAGAACCCAATGTTCTCTCCGGTCGCTTCATCGTCGTCGCTTCTCGTCGCCGTCTACTTCTTCTTCTCAAAACTACGTTGACTCTCCTCACAATTTGAAAAATCTAACTCCAGTCCCAGCCTCCTCCCCTACTATTTTGCACCGTCACCCGTCGGATCCACTTTCGCCGATTTTACCTGCCAGTTCTTTGCGTCGGTATTCTGTTCTCGCTCTTTGTGCTTCCGTAGTTTCTGCTTTGGTTGCCTCGATTGTTGTTTTCTCCTCTGATCGCCAGTCTAGCCACGATCAGAAAAGCTCCAATCCTCTGTATGATGGTATTGAACAGGCAGTTCACAAGTCTGGGGATTCTTTCAAGAGGATTTTCCACCACGTCAAGCAAACTGGTGTCGCCGCTTCGGTTCTATGGCAGTCTTTGAGTTCCGTGTTGTCAAACGCCAACCACGAGGTCATATCTGGCTTCGAACTTAGGGTTGCGGCATTGCTAGCAGACATTGCTGCGGCCAATGCTGACCGTAGGGCGGCAATTGTCGGGGCAGGGGGCGGTGCTGTGGTGGATTGGTTGCTTGATTCGGTGGCATTTCCGCGGAATGGATGTGAAACACAGGCAGAATCTGCCAGGGCTCTTGCCTACTTGATTGCTGATCCCAAAGTGTCAGCTTCTGTGCTTGGGAGGCGTGGCGCTGTTCCCAATCTGTTGAGGTTTATTTTTTCATGCCAGCCTCTGCGATCCAAGAAGCAGCATCTAAGACGTAGTTCATTCGATGTTTCTGATTCTTTGAAAGGTAGGAGCATGCTTGTTGCTGCCATCATGGACATTGTCACTTCCAATTGTGATGGTTTACAAAGGATAGAATCTGAGCCATTCTTGCCTAAAAATGCTGAGACCAGAGATATTGCGGCTGCCCTTCAAGTTATTGAGGATGGTGGCCTGCATTTGGATGAGCCCGATGGAGAGGAAGATGATAGTGATGGTGATAGCCGAATAAAAGGAATTGGCATGAAAGTTCTCGGGGGCACTACTGTTGTCGGGCTTTCAAGAACAAATGTACCATTTGCTGCATGGGCCTTGGCAAAGTGGGCATCTGCATCGGACGTGAACAGATCTCGAATTCAGGAGCTGGACAATGATGGTCATGCTGTCATGACTGCATTAATGGCTCCTGAGAGATCTGTGAAATGGCATGGGAGTTTGGTGGCAAGGTTGCTATTAGAGGATCACAATCTATCCTTAAATGATTCTGTTTCTGATTGGAGTTCTTGCCTTCTTTCTACTGTTTCTCAAGCGAGCAAGAATGAAGATATTCAGTTAGTTCAAGTTGCCATGTCTGCTTTTTTGCTTTCTGTTGAAAGGAGTCCAGGGGCACAGAAATTAGTGATGGAGAAGGGTCTTCATCTGATGAGAGATGTTGCTAAGCGGACTTCAAATTATAAACAAGTACAAGAAGGAATAGCAAAGGCATTAGAGTTGCTTTGCGCTGGAAATATGCATCTATCTCTTGAAGAGATTAAAATGTGGTCTGCCATACTGCTTTATTGGATATTTGGAAAGTTTGCCTCGGAAACTTTGCGATCATCTGCAATGAAAATCCTATCTTGCATCTTTGAAGACTACGGACCTGCTTCTATACCAATTTCACAAGGATGGCTTGCAATGCTGTTGACTGAAATCCTGGCTTCTACCAAGGCTGCCTCTGTTAAAGGAGTAACACAGCCTAAAGGTGATAAAGTAAAGACCCAAATTGATCAGTCAAATGTTGTTTCTGCTGGTCAAATCACTAACCAGTTGGCAGGAGCTGTTGTCAAGCTAGCAGAAAAACAAGACAAAATGACCACTGATTCAAGAGATGCAGATTCCCAGTTAGATCTTCTTTCACAAGAACCTTTTATGGGACCTTTGAAGAATTTAAAGAAAGATGATCTTCAAAAGTTTGATGCAGCTGATTCTGCAATGGCAACATTGAAAGGGATCAAAGCTCTGAGTGAAATTTGTGTTGATGGTTCTTGTCAGAACAAAATAGTTGATTTAGGGGTTCTGTGCTTGCTGAGACGATTTTTGTTATCTGATGATTATGAGAAGCTGGCTGCAATTGAAGCGTATGATGCATCTAGGACTCGTGAGGCCGAGGAACCTGTTTCATATGTTCCTGGTGAATCGTCTGTTTCAGATATCAACGACCCTTTGAGTGTCCGTGTTCCACCTACAGCTCACATTCGTAGGCATGCTGCTAGGCTTTTAAGCATACTCTCTCTCCTTCCAAAAGTCCAGAAGGTGGTTGTTGCTGACGAGGCATTATGTAAATGGCTTGAAGACTGTGCTGGTGGGAAAATTTCTGGTTGCGTGTTGCATATATTTTGCAATGACCTTGTAGGTTCTGAAAGGGGTCATGTTTCTCACATGAGTTCTGCAGAAAATGAGAGGATTTGTTCTCGTTATGATGGCATGCTCTTTTTAATTAATCCTGCACTACCCCATTGGAAGTGCTCTGAGAAAATAGGTCAAGATGCTCTTCAAAAGAATAAATTTGTTAATAGTGATAACAGTCCTAGAGATCCAAGTTATGGCAACCTCTCCGATTCACCTGATGTATTTGAGTCTCCAAAGCTAGATGTTATTTTTGTTCATGGACTTCGTGGTGGACCTTTTAAGTCTTGGCGGATAGCGGAGGACAAGTCCTCAACTAAGTCTGGATTGGTAGAGAAGATTGATCAGGAGTCTGGGAAGCTAGGGACGTTTTGGCCTGGTGAATGGCTATCATCTGACTTTCCAAAAGCTCGCATGTTTACAATTAAATATAAGACAAATCTTACCCAATGGTCTGGAGCTAGCCTGCCTCTGCAGGAAGTTAGCTCCATGCTATTGGAGAAGCTTGTTTCTGCGGGGATTGGGGATCGACCAGTTGTATTTGTAACTCACAGCATGGGTGGCTTAGTCGTCAAGCAGATGCTGCATAAAGCTAAGACGGAGAATATTGATAACCTCGTGAATAATACTGTGGGAATTGTTTTCTATAGCTGCCCACATTTTGGCAGCAAACTAGCAGACATGCCTTGGCGAATGGGCCTTGTACTTCGCCCTGCTCCAACTATAGGTGAGCTAAGGAGTGGATCTCCTCGATTAGTGGAGCTTAATGACTTTATCCGTCACCTTCACAAGAAAGGGCAGCTTGAGGTTCTCAGTTTCTGTGAGACAAAAGTGACTCCAATTGTTGAAGGTTATGGAGGATGGGCATTTAGAATGGAAATTGTACCAATTGAATCTGCATATCCTGGATTTGGTGAACTCGTTGTGTTGGAGTCAACAGATCACATAAATTCATGTAAACCACTCAGCCGAGCTGATCCTTCATATACCGAGACTTTGGAATTTTTGCAGAAGCTGAAAGCCCAATACACTTGA 3417 44.48 IMLRLCFRTQCSLRSLHRRRFSSPSTSSSQNYVDSPHNLKNLTPVPASSPTILHRHPSDPLSPILPASSLRRYSVLALCASVVSALVASIVVFSSDRQSSHDQKSSNPLYDGIEQAVHKSGDSFKRIFHHVKQTGVAASVLWQSLSSVLSNANHEVISGFELRVAALLADIAAANADRRAAIVGAGGGAVVDWLLDSVAFPRNGCETQAESARALAYLIADPKVSASVLGRRGAVPNLLRFIFSCQPLRSKKQHLRRSSFDVSDSLKGRSMLVAAIMDIVTSNCDGLQRIESEPFLPKNAETRDIAAALQVIEDGGLHLDEPDGEEDDSDGDSRIKGIGMKVLGGTTVVGLSRTNVPFAAWALAKWASASDVNRSRIQELDNDGHAVMTALMAPERSVKWHGSLVARLLLEDHNLSLNDSVSDWSSCLLSTVSQASKNEDIQLVQVAMSAFLLSVERSPGAQKLVMEKGLHLMRDVAKRTSNYKQVQEGIAKALELLCAGNMHLSLEEIKMWSAILLYWIFGKFASETLRSSAMKILSCIFEDYGPASIPISQGWLAMLLTEILASTKAASVKGVTQPKGDKVKTQIDQSNVVSAGQITNQLAGAVVKLAEKQDKMTTDSRDADSQLDLLSQEPFMGPLKNLKKDDLQKFDAADSAMATLKGIKALSEICVDGSCQNKIVDLGVLCLLRRFLLSDDYEKLAAIEAYDASRTREAEEPVSYVPGESSVSDINDPLSVRVPPTAHIRRHAARLLSILSLLPKVQKVVVADEALCKWLEDCAGGKISGCVLHIFCNDLVGSERGHVSHMSSAENERICSRYDGMLFLINPALPHWKCSEKIGQDALQKNKFVNSDNSPRDPSYGNLSDSPDVFESPKLDVIFVHGLRGGPFKSWRIAEDKSSTKSGLVEKIDQESGKLGTFWPGEWLSSDFPKARMFTIKYKTNLTQWSGASLPLQEVSSMLLEKLVSAGIGDRPVVFVTHSMGGLVVKQMLHKAKTENIDNLVNNTVGIVFYSCPHFGSKLADMPWRMGLVLRPAPTIGELRSGSPRLVELNDFIRHLHKKGQLEVLSFCETKVTPIVEGYGGWAFRMEIVPIESAYPGFGELVVLESTDHINSCKPLSRADPSYTETLEFLQKLKAQYT 1138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1469959 1475897 + Bma018623.7 Bma04g00176 80545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00176 1138 SUPERFAMILY alpha/beta-Hydrolases 871 1133 IPR029058 -
Bma04g00176 1138 MobiDBLite consensus disorder prediction 848 867 - -
Bma04g00176 1138 Gene3D alpha/beta hydrolase 869 1061 IPR029058 -
Bma04g00176 1138 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 2 355 - -
Bma04g00176 1138 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 355 1136 - -
Bma04g00176 1138 MobiDBLite consensus disorder prediction 20 40 - -
Bma04g00176 1138 SUPERFAMILY ARM repeat 163 698 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00176 K23504 SERAC1; protein SERAC1 - csv:101222471 1459.51
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g809 . Blo12g00948 . Bda03g00222 . Bpe04g00189 Bma04g00176 . . . . Cma09g00214 . . . Cpe06g00149 . . . . . . . . . . . . . . . . . . Cone20ag0175 Lsi04g01580 Csa04g02389 . . . . . . . . . . . . Cmo09g00207 . . . Car09g00182 . . Bhi09g03347 . . . . . . Cla05g02022 Cam05g2172 Cec05g2188 Cco05g2236 Clacu05g2165 Cmu05g2033 Cre05g2161 . . Chy07g00115 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005432 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00176 Bma_Chr04 FPKM 1.797775 2.528449 13.479343 12.558112 9.32748 10.402043 9.006795 11.651765 11.427891 10.273107