Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00177 TATAGGATGCAGTCGGACGGTTCTGATGCGCAGACGGCGCAGCAGCCGGAGCAGAATCAGCGGCAACAATCGCAGCCACCGCCACAGCAGTGGATGGCCATGCAGTATCCGGCGGCGGCGATGGTAATGCAGCACCAGATGATGCGGCATCAGCATTACGTTCCGTCCATACCGCCGCATTACGTGCCGTACCATCAGTTTCAGCCGTACCATCCGCTAGTGCAACAGGGTCAGCAGCATCACCAAGGATCTTCCGGCGAGAACAGGACGCTATGGGTCGGCGATTTGCACCATTGGATGGACGAGAATTACCTCCATAATTGCTTCGCTTCTACTGGCGAGATTTCTTCCATTAAGGTTATTCGAAATAAACAGTCTGGTTTATCAGAAGGCTATGGATTTGTGGAATTTTTGTCCCACGCAACAGCTGAGAAAGTTCTGCAAAACTACAGTGGCATCCTTATGCCAACTACAGAACAACCTTTTCGCCTTAACTGGGCGACATTTAGCTCGGGAGAAAAGCGTTCGGATAATGGTCCTGATCTTTCTATCTTTGTAGGAGATTTAGCAGCAGATGTTAATGACAGTTTATTGCGTGAAACTTTTGCTGGTAAATTTCCATCAGTTAAGGCAGCAAAAGTTGTTTTTGATGCCAACACTGGTCGTTCGAAGGGTTATGGTTTTGTCAGGTTTGGAGATGATAATGAGAGGTCACAAGCCATGACAGAGATGAATGGTGCTTATTGTTCGAGCAGGCCTATGCGCATTGGTGTAGCAACGCCAAGGAAGTCCTCTGGATACTCGCAGCAATTTTCCTCGCTAGGAGGATATGGATCAAACAGTTCCTTCACTCGGGGTTTTCAATCTGACAATGATTCAACAAACACGACAATATTTGTTGGAGGGCTTGATCCTAATGCGAGTGATGAAGATCTTAGACAGCCTTTCTCTCAATACGGGGAGATAGTTTCTGTCAAAATACCCGTTGGAAAAGGATGCGGGTTCGTGCAATTTGCCAGCAGAAACAATGCCGAGGAGGCTTTACAGAAACTAAACGGTACCCAGGTGAGAGGAGAATTCGGCAACCAGTGGAACGGAGCATACTATGGAGGGCAGGTTTACGATGGATATGGATACGCCATGGCGTCCCCTCACGATCCCGGGATGTTTTCTGCATCTGCTGCAATGTATGGAGCTTATCCTTTCTATGGAACCCATCAAGAGCAAGTAAATGTAAGGCTATTCGATTGGATCGATTCTTCAATTGCATCATCTTGCTTGTTTTCTGAAATATTAATTGGCTATGAAGGTGGGCATGGTTCCATTTTTCCAGATTCGAAGATGAACAGTAGATGGAGGAATAGGCTACAGACTCTGAAATCTTCCAAGAATGAAGAGGATAATGTGGAGATTCTGGAAACCAAGTTAAGGAATGGTTCTGCTAAAGAAACTTCAAGTGGACGAGTTTCGAGGGGAGAGAGAAAAAAAGCCCTGCAGAAAGACATTGATAAGCTAAAGAAGAAGCTGAGACAGGAAGAGAACATACAGAGAGCTTTGAAGAGGGCTTCCACAAGACCTTTGGGAGCTTTTCCTCGTCTCCCTCCTTTCCTCCCTCCATACATGATAGAGCTGATTGCAGAAGTAGCTGTTTTGGAGGAGGAGATTGTTCGACTTGAACAACAGGTTGTTCATTTTAGGAAAAACTTGGACCAGGAAGCTGTAAATTTTTCATTTTCAAAGAAGGTCAAAGAAAATTTATCTGGTTTATATGAGCCTTACTTGGTATATATTCTAAAGTCATAG 1803 45.37 YRMQSDGSDAQTAQQPEQNQRQQSQPPPQQWMAMQYPAAAMVMQHQMMRHQHYVPSIPPHYVPYHQFQPYHPLVQQGQQHHQGSSGENRTLWVGDLHHWMDENYLHNCFASTGEISSIKVIRNKQSGLSEGYGFVEFLSHATAEKVLQNYSGILMPTTEQPFRLNWATFSSGEKRSDNGPDLSIFVGDLAADVNDSLLRETFAGKFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGAYCSSRPMRIGVATPRKSSGYSQQFSSLGGYGSNSSFTRGFQSDNDSTNTTIFVGGLDPNASDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFASRNNAEEALQKLNGTQVRGEFGNQWNGAYYGGQVYDGYGYAMASPHDPGMFSASAAMYGAYPFYGTHQEQVNVRLFDWIDSSIASSCLFSEILIGYEGGHGSIFPDSKMNSRWRNRLQTLKSSKNEEDNVEILETKLRNGSAKETSSGRVSRGERKKALQKDIDKLKKKLRQEENIQRALKRASTRPLGAFPRLPPFLPPYMIELIAEVAVLEEEIVRLEQQVVHFRKNLDQEAVNFSFSKKVKENLSGLYEPYLVYILKS 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1500509 1507544 + Bma018624.1 Bma04g00177 80546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00177 600 Pfam Leucine-zipper of ternary complex factor MIP1 493 572 IPR025757 -
Bma04g00177 600 Gene3D - 88 168 IPR012677 -
Bma04g00177 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 358 IPR000504 GO:0003723
Bma04g00177 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 254 IPR000504 GO:0003723
Bma04g00177 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 155 IPR000504 GO:0003723
Bma04g00177 600 SMART rrm1_1 183 257 IPR000504 GO:0003723
Bma04g00177 600 SMART rrm1_1 297 361 IPR000504 GO:0003723
Bma04g00177 600 SMART rrm1_1 90 165 IPR000504 GO:0003723
Bma04g00177 600 Gene3D - 170 278 IPR012677 -
Bma04g00177 600 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 24 410 - -
Bma04g00177 600 Gene3D - 280 362 IPR012677 -
Bma04g00177 600 SUPERFAMILY RNA-binding domain, RBD 58 171 IPR035979 GO:0003676
Bma04g00177 600 Coils Coil 541 568 - -
Bma04g00177 600 CDD RRM2_SECp43_like 181 260 - -
Bma04g00177 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Bma04g00177 600 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 24 410 - -
Bma04g00177 600 CDD RRM1_SECp43_like 90 170 - -
Bma04g00177 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 359 IPR000504 GO:0003723
Bma04g00177 600 SUPERFAMILY RNA-binding domain, RBD 181 358 IPR035979 GO:0003676
Bma04g00177 600 Coils Coil 495 525 - -
Bma04g00177 600 MobiDBLite consensus disorder prediction 1 29 - -
Bma04g00177 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 169 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00177 - - - cit:102622145 609.372
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02286 Bma04g00177 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00177 Bma-Chr4:1500509 Bma12g00469 Bma-Chr12:12498613 1.09E-146 dispersed
Bma01g02286 Bma-Chr1:80048187 Bma04g00177 Bma-Chr4:1500509 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00177 Bma_Chr04 FPKM 0.0 0.0 0.508833 0.140942 11.044703 10.391304 11.442523 0.448965 0.378202 0.196828