Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00183 ATGCATCTTTCACTATGGAAGCCTTTATCCCACTGTGCCGCCTTAATTTCGGAGAAGAAAACCAGGAGGAGAGGCCGAGACACTGGTTCCTCTGTGGCCGAAGACGCAAAGCGAAAGTCCTCGATCTTGAGGCAATTGCAGGAGAACAAGTTGAGAGAAGCTCTCGAAGAAGCTTCAGAAGACGGGTCTCTCGCCAAATACAGAGACATTGATTCCGAATCACCGAATCAAGACGGAAGCTTCGGTCGGTCAAGATCTCTCGCGAGGCTTCACGGTCAGAAAGAGTTTCTCCGCGCCACCGCGCTGGCTGCGGAGCATATATATTCCACCGAAAACTCCATACCCGATCTGCACGATGCCTTTTCTAGGTTTCTTACAATGTACCCTAAATTTCAGTCCTCGGAGAAGATCGACCATTTAAGATCGGACGAATACGAGCATCTCTCCGATTCATTTGCTAAGGTATGCCTTGATTATTGTGGTTTTGGACTGTTCTCTTATCTTCAAACGCAACAATTTTGGGAGTCGTCGGCGTTTACGCTCTCTGAAATTACTGCGAATTTGAGTAACCACGCCCTTTACGGCGGCGCCGATAAAGGCACGGCGGAAAACGATATTAAGAGTAGAATTATGGAGTATTTGAACATCCCGGAAAATGAATATGGTCTTGTTTTCACTGTAAGTAGAGGCTCTGGGTTTAAATTGCTGGCTGAATCTTACCCTTTTCAAACGAACAAGAAGCTTTTAACCATGTTTGACCATGAAAGCCAGTCTGTAAATTGGATGGCTCAGAGTGCAAAGGAGAAAGGAGGTAAGGTTTCTAGTGCTTGGTTCAAGTGGCCAACGCTGAGACTCTGTTCGAGGGAGTTAAGGAAACAGATTACAAACAGTAAAAGAAGGAAGAAGGATTCTGCCGTTGGGCTGTTTGTATTTCCTGTCCAGTCTAGAGTAACTGGAGCTAAGTATTCTTACCAGTGGATGTCTCTTGCCCAGCAGAACAATTGGCATGTTTTGCTTGATGCCGGATCATTGGGTCCTAAAGACATGGATTCTTTAGGGCTTTCCCTCTTTCGTCCTGATTTCATCATCACTTCATTTTATCGGGTATTTGGATTCGACCCGACCGGATTTGGATGTCTTTTGATCAAGAAATCGGTGATGGGAAGTCTGCATATCAAATCCGGGCGAACTGGGTCTGGTATGGTGAGGATTCTCCCTGTTTTCCCTCAATACATAGGTGATTCGATGGACGGGCTCGATGTTTTTGCTGGAATCAACGACGATTTAATCAACGGTACTGAAGAAGAGTCCATCTCTGAGACTCCCGGAGGATCACAGCTGCCGGCATTTTCAGGTGTTTTTACATCCAACCAGGTGAGTGATGTGTTTGAAACCGAGATGGAACAAGATAATAGCTCGGACAGGGATGGAGCGAGCACTGTTTTTGAGGAGGCGGAGAGTGTTTCGGTTGGTGAGGTAATAAAAAGTCCGATCTTTAGTGAGGACGAGTCATCGGAAAATTCATATTGGATCGATTTAGGTCATAGTCCTTTCGGGTCTGAAAAATCCAGCAAATCGACCAGACAAAAAAAGGGATCGCCTTTGCCTCCATCGTGGTTTTCTGTAAGGAGAAACAACAAAAGAGCCTCCTTAAAATTGTCTTCAAGAATATCAAATAGTCCTCTACGAGATAATTTCTTCCGAGTAGAAGTCGTCACGGCTTCTCTTGGGTTTCTCACTAACTTTGAAGATGTTTACAAAATGTGGGCTTTCATAGCCAAGTTTCTCAATCCATCGTTTGTTGGAGAATCGTTAGATGGTTCAGAAACTTAG 1833 45.01 MHLSLWKPLSHCAALISEKKTRRRGRDTGSSVAEDAKRKSSILRQLQENKLREALEEASEDGSLAKYRDIDSESPNQDGSFGRSRSLARLHGQKEFLRATALAAEHIYSTENSIPDLHDAFSRFLTMYPKFQSSEKIDHLRSDEYEHLSDSFAKVCLDYCGFGLFSYLQTQQFWESSAFTLSEITANLSNHALYGGADKGTAENDIKSRIMEYLNIPENEYGLVFTVSRGSGFKLLAESYPFQTNKKLLTMFDHESQSVNWMAQSAKEKGGKVSSAWFKWPTLRLCSRELRKQITNSKRRKKDSAVGLFVFPVQSRVTGAKYSYQWMSLAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGFDPTGFGCLLIKKSVMGSLHIKSGRTGSGMVRILPVFPQYIGDSMDGLDVFAGINDDLINGTEEESISETPGGSQLPAFSGVFTSNQVSDVFETEMEQDNSSDRDGASTVFEEAESVSVGEVIKSPIFSEDESSENSYWIDLGHSPFGSEKSSKSTRQKKGSPLPPSWFSVRRNNKRASLKLSSRISNSPLRDNFFRVEVVTASLGFLTNFEDVYKMWAFIAKFLNPSFVGESLDGSET 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1562221 1565004 + Bma018631.1 Bma04g00183 80552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00183 610 MobiDBLite consensus disorder prediction 519 539 - -
Bma04g00183 610 MobiDBLite consensus disorder prediction 18 39 - -
Bma04g00183 610 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 36 449 - -
Bma04g00183 610 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 550 603 - -
Bma04g00183 610 SUPERFAMILY PLP-dependent transferases 185 399 IPR015424 -
Bma04g00183 610 PANTHER OS03G0765800 PROTEIN 36 449 - -
Bma04g00183 610 PANTHER OS03G0765800 PROTEIN 550 603 - -
Bma04g00183 610 Gene3D - 176 416 IPR015421 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00183 - - - zju:107420352 935.636
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02291 Bma04g00183 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00183 Bma-Chr4:1562221 Bma15g00864 Bma-Chr15:22978833 4.01E-13 dispersed
Bma12g00598 Bma-Chr12:27002751 Bma04g00183 Bma-Chr4:1562221 9.57E-13 transposed
Bma01g02291 Bma-Chr1:80116421 Bma04g00183 Bma-Chr4:1562221 5.74E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g837 . Blo12g00938 Bda01g00558 Bda03g00231 Bpe02g00415 Bpe04g00196 Bma04g00183 Bma01g02291 . . Cma01g01875 Cma09g00198 Car01g01461 . . Cpe06g00135 . . . . . . . . . . . . . . . Cone4ag1547 Cone7ag1404 . . Lsi04g01604 Csa03g04151 Chy04g00569 . . . . . . . . . . Cmo01g01933 Cmo09g00193 . . . Car09g00167 . Cpe02g00153 Bhi09g02024 . . . . Mch11g0244 . Cla05g01995 Cam05g2146 Cec05g2161 Cco05g2209 Clacu05g2137 Cmu05g2009 Cre05g2134 . . . Cme04g00680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005433 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00183 Bma_Chr04 FPKM 4.33638 5.36403 0.186782 0.13805 0.628159 0.581567 0.450411 0.0 0.0 0.0