Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00186 ATGGATTTCATCTTCTCTCTAGCAAAACCCGTAGTAGCTCTAACAGTAGCCCTCCTGCTTTCATTCTGTTTTTCACGGAGGTGGGGTAGTTCCGCTAAGCTCAAACCAGCTCCTGAAGTGCCTGGTGGATGGCCCATTGTCGGTCATCTTTTTATGTTAAGAAGAGGGCAGCCTCCGCACAAAACTTTGGGAGCCATGGCCGACAAGTATGGGCCAATTTTCACCATTCGTCTTGGTGCGCACCTTACACTGGTGGTGAGCAATTCAACAATGGCGAAGGAGTGCATGGTGAACAACGAGGCAGCCCTGTTTGCTCGCCCACATTCCTTGGCCGCTAAATACCTGAGCTACGACTTTGCCCTTTTCGCTTTTTCAAACGACGCTGCTTACTGGCGTCTAGTGCGTAAGGTTATAGCGTCGGAGCTTTTCTCGAACCGCCGACTCGAGCAGCTCAAGCACGTGATAGTCTCAGAGATGGACGTTTGGATAGCCGAGGTTCATGATAATTGGTTCGTCGAGGAAGTTAAAAACTCATCTGGAAATAAGGCTCCGGTGGAGTTAAAAGAACTGTTTTTCAATTTGTCGTACAACGTGATTATGAAGTTACTGGTGGGAAAACGCTACTTTGGATCGAGGAAGGAAGGAAATGAAGAAGAAGCGAGAAGGTTTTCAAAAGCGCAAGAAACGTTCTTCCATTACCTGGGGATGTTCATGGCGTCTGATGCTATTCCTTTTCTCGCCATGTTTGATTTTGGAGGACACCAAAAGGGGATGAAAGAAGTAGCCGAAGAAATGGACAATATCGTTGGAGGGTGGCTGGAAGAGCATAAGAGAAGGAGAGTTTCCGGTGTGCCGGAAAATGAAAAAGACTTCATGGACGCAATGCTTTCTACTCTTGCCGGAGAAGAACTCCATGGTTACAGTCTAGATACAGTAACTAAGGCAACAATTTTGACAGTGATTGCAGCCGCCAGTGATACCATAGCAGTAGTACTAACATGGGCGACGTCGTTATTGCTTAACAATCCTCACGCCATGAAAATTGTTCAGAAAGAGTTTGACGACAAGATTGGTAGGGAAAGAGTAGTGAATGATTCGGACATGGGGAACCTGGTTTACCTTCAAGCAATATTTAAAGAGACACTTCGTTTATATCCACCCGGACCTCTCACTGGAACGCGTGAGTTCACTGAGGATTGTATCGTCGGAGGGTACCATATACCAAAAGGAACCCGATTCATTCCGAACTTATGGAGGATCCAGACTGACCCGGAAGTGTGGTCGGAGCCACTGGAATTCAAGCCGGAGAGGTTTCTGACGAAGCGTATGTATGTCGACGTGAGGGGTAATCATTTCGAGCTGATTCCATTCGGCAGCGGAAGAAGAATTTGCCCAGGAATCAACTTCGCAATGCAAATGGTGCCTTTCGCCATGGCTAGGTTTTTACAAGCATTCGACGTGGAAACTCCATCAAAAGAACCAGTTGACATGACTGAGAGCACTGCTTTCACTAACATGAAAACCACTCCGCTTCAGGCTCTTGTATCACCTCGCTTGTCCGCTCAGTTTTTTAAAAGTTGA 1581 46.87 MDFIFSLAKPVVALTVALLLSFCFSRRWGSSAKLKPAPEVPGGWPIVGHLFMLRRGQPPHKTLGAMADKYGPIFTIRLGAHLTLVVSNSTMAKECMVNNEAALFARPHSLAAKYLSYDFALFAFSNDAAYWRLVRKVIASELFSNRRLEQLKHVIVSEMDVWIAEVHDNWFVEEVKNSSGNKAPVELKELFFNLSYNVIMKLLVGKRYFGSRKEGNEEEARRFSKAQETFFHYLGMFMASDAIPFLAMFDFGGHQKGMKEVAEEMDNIVGGWLEEHKRRRVSGVPENEKDFMDAMLSTLAGEELHGYSLDTVTKATILTVIAAASDTIAVVLTWATSLLLNNPHAMKIVQKEFDDKIGRERVVNDSDMGNLVYLQAIFKETLRLYPPGPLTGTREFTEDCIVGGYHIPKGTRFIPNLWRIQTDPEVWSEPLEFKPERFLTKRMYVDVRGNHFELIPFGSGRRICPGINFAMQMVPFAMARFLQAFDVETPSKEPVDMTESTAFTNMKTTPLQALVSPRLSAQFFKS 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1604830 1606496 - Bma018635.1 Bma04g00186 80555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00186 526 Pfam Cytochrome P450 38 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 PANTHER CYTOCHROME P450 82A2 13 524 - -
Bma04g00186 526 SUPERFAMILY Cytochrome P450 41 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 Gene3D Cytochrome P450 31 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 PANTHER CYTOCHROME P450 82C3-RELATED 13 524 - -
Bma04g00186 526 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506|GO:0016705
Bma04g00186 526 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00186 526 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00186 - - - csin:114277421 575.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00186 Bma-Chr4:1604830 Bma04g00190 Bma-Chr4:1677943 0 dispersed
Bma04g00185 Bma-Chr4:1573005 Bma04g00186 Bma-Chr4:1604830 8.59E-129 tandem
Bma04g00186 Bma-Chr4:1604830 Bma04g00187 Bma-Chr4:1609049 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g843 . . . Bda03g00233 . Bpe04g00198 Bma04g00186 . . . . Cma09g00192 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01609 Csa03g04156 Chy04g00560 . . . . . . . . . . Cmo01g01938 Cmo09g00188 . . . . . . Bhi09g02030 . . . . . . Cla05g01988 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00186 Bma_Chr04 FPKM 1.316804 0.0 1.478145 2.238435 2.425584 2.460539 3.977444 3.89202 5.126395 3.603776