Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00187 ATGAGATCAAAGTTTGTTTCCATGGATTTCCTCTTTTCTTTTTCAGAAGCTGTAGTAGCTTTTGCGGTAGTCCTATTTCTTTCGTTCTGTTTTTCACTAAGGTGGGGTTCTGCTAAGCTTAAATCACCACCAGAAGTGACGGGAGGATGGCCCGTAATCGGCCATCTTTTGAGGCTAGGAGGGTCGGAACCTCCCCACAAAGCTTTAGGAGCGATGGCCGACAAGTATGGGCCGATTTTCACCATTCGTCTCGGTGTGCACCGTGCAGTGGTGGTGAGTAATTCAGCAATGGCGAAGGAGTGCTTCACCCTGAACGATGCAGCCCTTTTTGGTCGCCCTCAAGCCTTGGCTACTAAAAACTTGACCTACGATTTTGCCCTTTTTGCGTTTACGAACAACGCTCCATACTTGCGTGAATTGCGTAAAATTACAACGTCGGAGCTTTTTTCCAACCGCCGGATCGAACTCCACAAGTACATCAGGATCAGGGAGGTGGACACGTGGATAGCCGAGCTGCTTGATAATTGGTCGGCCGAGAAAGCTAAAAACTCGTCGGAGAAGGTTAAGGTGGAGTTGAAGGAATCATTTGGAAATTTGACGTTTAACTTAATTCTGAAAATACTTGTGGGAAAACGCTATTTCGGTTCAAGGAAGGAAGGGAATGAGGAAGAAGCAATAAGGTTTTCTAATGCACAAAAAAGGTTCTTCCATTATATGGGAAAGATTATGGTGTCTGATGTTATTCCCTTTCTCGAAAAGTTTGATTTTGGAGGACACCAGAAAGGAATGAAGAAAGTAGCCGAAGAAATGGACGGCGTCCTTGAAGGATGGTTGGAGGAGCACAAGCGGCGGAGAGTTTCAGGTGTGTCCGACGATGACAAAGACTTCATGGACGTAATGCTTTCCACTCTCGACGGCGAAGACCTTCACGGTTATTCATCAGATACAGTAGTCAAGTCCACGATCTTGGGTCTGATTGCAGCGGCCAATGATACCACCTCGATAACTCTAACTTGGGCGATGTCACTACTGTTGAATAATCCCGTCACTCTGAAAAACGTAATAAGAGAGCTTGACGAGGAGATTGGTCGGGAAAGAGCAGTAGTGAATGAATCAGATTCAGGGAAGCTGGTTTATCTCCAGGCAGTTGTAAAGGAGACACTTCGTTTATATCCGCCGGGACCTCTTGCCGGAACACGTGAACTCATCGATGATTGTGTTGTCGGAGGCTTCCATATCCCGAAAGGAACCCGACTCATCCCAAATTACTGGAAGATCCATGTGGACCCTAGAGTCTGGCCGGAGCCGATGGAGTTCAAACCGGAGAGATTTTTGACGACCCATAAGAATGTTGAGGCGAGGGGGCATCATTATGAGCTCATTCCTTTCGGAAGTGGAAGAAGAGTTTGTCCTGGAATCGACCTTTCCCTGAAAATGATTCCCTTTATTCTCGCTAGGTTATTACAGGCATTTGACGTTGAAATTCCTTCGGACAAACCATTTGACATGGCTGAAAACTCTGATTTTACAAACAGAAAAACCACTCCACTCGAAGTTCTCATCACTCCTCGCTTGTCAGCTGATATTTTGAATTTCCTGTAA 1602 45.94 MRSKFVSMDFLFSFSEAVVAFAVVLFLSFCFSLRWGSAKLKSPPEVTGGWPVIGHLLRLGGSEPPHKALGAMADKYGPIFTIRLGVHRAVVVSNSAMAKECFTLNDAALFGRPQALATKNLTYDFALFAFTNNAPYLRELRKITTSELFSNRRIELHKYIRIREVDTWIAELLDNWSAEKAKNSSEKVKVELKESFGNLTFNLILKILVGKRYFGSRKEGNEEEAIRFSNAQKRFFHYMGKIMVSDVIPFLEKFDFGGHQKGMKKVAEEMDGVLEGWLEEHKRRRVSGVSDDDKDFMDVMLSTLDGEDLHGYSSDTVVKSTILGLIAAANDTTSITLTWAMSLLLNNPVTLKNVIRELDEEIGRERAVVNESDSGKLVYLQAVVKETLRLYPPGPLAGTRELIDDCVVGGFHIPKGTRLIPNYWKIHVDPRVWPEPMEFKPERFLTTHKNVEARGHHYELIPFGSGRRVCPGIDLSLKMIPFILARLLQAFDVEIPSDKPFDMAENSDFTNRKTTPLEVLITPRLSADILNFL 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1609049 1610721 + Bma018636.1 Bma04g00187 80556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00187 533 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 PRINTS E-class P450 group I signature 199 217 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 PRINTS E-class P450 group I signature 317 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 PRINTS E-class P450 group I signature 470 493 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 PRINTS E-class P450 group I signature 460 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 PRINTS E-class P450 group I signature 97 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 PRINTS E-class P450 group I signature 381 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 Gene3D Cytochrome P450 34 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 463 472 IPR017972 GO:0005506|GO:0016705
Bma04g00187 533 PANTHER CYTOCHROME P450 82A2 17 529 - -
Bma04g00187 533 Pfam Cytochrome P450 45 511 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 SUPERFAMILY Cytochrome P450 37 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 PRINTS P450 superfamily signature 328 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 PRINTS P450 superfamily signature 461 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00187 533 PANTHER CYTOCHROME P450 82C3-RELATED 17 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00187 - - K23136 qsu:112023929 570.466
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00187 Bma-Chr4:1609049 Bma04g00190 Bma-Chr4:1677943 0 dispersed
Bma04g00186 Bma-Chr4:1604830 Bma04g00187 Bma-Chr4:1609049 0 tandem
Bma04g00187 Bma-Chr4:1609049 Bma04g00188 Bma-Chr4:1642580 4.93E-143 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g847 . Blo12g00929 . Bda03g00235 . Bpe04g00199 Bma04g00187 . . . . Cma09g00190 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01612 Csa03g04159 Chy04g00558 . . . . . . . . . . Cmo01g01939 Cmo09g00185 . . . . . . Bhi09g02032 . . . . . . Cla05g01986 . . . . . . . . . Cme04g00667
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00187 Bma_Chr04 FPKM 12.214851 12.10006 8.557594 8.213598 5.572429 5.901975 5.70521 0.42914 0.573255 0.754596