Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00188 ATGGCTGACAAATACGGGCCCGTCTTTACTATGAGATTAGGTGTTCATAAGACTCTGATAGTTAGCAATTGGGAGATTGCCAAAGAGTGTTTTACTGTAAACGATCAAAATTTCGCCACTCGTCCAAAGCATTTAGCCTTTGAGCTCTTAGGCTACGACTATACCATGATAGGTTTCTGCCTTTATGGACCCGTCTGGCGCCAAGTGAGAAAAATAGCTATCGTCGAGCTACTTTCAAGCCACCGTTTAGGGATGCTCAAACACATCAGGGAATCCGAGGTTCAGCTCTCCATTAGAGAGATGTACGATTTGTGGGTGAGAAAGAAAGACACTGATGAACATGGAGTGAAGGTAGAGATGAAGATGTGGTTTAGAGAGGTTACTCTAAACATAATATTTAGGATGGTGGTGGGGAAGAGATTCACAGAAGCTTTCAAAGATGAAAAAATGAACCAGTGTATACGAGCCATGAGAAATCTCATTGATCTACTCGGAGCATTTGTGCCGACCGATTATTTCCCATTTCTGAGATGGTTGGATTTAGGAGGGTTTGAGAAGGCCATGAAAAAGACAGCAGAAGAACTAGATCAACTCATTGAAAACTGGCTTGACAAGCATAAGCAGAATAGAAATGAGAAAAAGTCTAAAAGCGAGCAAGACTTCATGGATGTTATGCTAGCCCTTTTCTACGACGGCCATCATGGTGGAGATGATTCCACCAGCAATCATGCCTCTGATAAGATTATCAAAGCTACTTGCTGGTCTATGATATTAGCTGGCTCAGACTCGACGGCTGGGACAATGACATGGACGCTATGTTTACTTCTCAACAACGAACGAGTCCTTAAAGAAGTACAACGTGAGCTAGACGAACAAATTGGAGACAAAAGGCAAGTAAACGAGTCTGATCTCAAAAACTTAGTTTACCTTAACGCGATCATAAAAGAGAGCATGCGTCTGTACCCGATCACCCCACTAGCGATTCCGCATGAATCTATGGAAGTTTGTAATATAGCTGGTCACCACATTCCTACTAGAACGCGTCTAATAGTCAACTTGTGGAAGATACAAAGAGACCCGAGAGTATGGAAGGAACCAGAAGAGTTTCGACCTGAGAGATTTCTCACCACCCACAAGGACGTGGAGTTGAGCGGCCAGCATCATGAGTTAATGCCATTTGGAAGTGGGCGAAGAATGTGCCCTGGTGTTTCGTTGGCTCTGCAATCTATGTTGCTTTCAATGGCAGCTTTATTGCATGGGTTTGAAATATCGGCATTCTCAGAAGAAGCTTTGGACATGCGTGAGAGACCAGGTCTCACTAGCATTAAAGAAACGCCCCTCGAGATATGCTTAAAACCACGCCTTGCTCCTCACCTCTATGCTTAA 1386 43.72 MADKYGPVFTMRLGVHKTLIVSNWEIAKECFTVNDQNFATRPKHLAFELLGYDYTMIGFCLYGPVWRQVRKIAIVELLSSHRLGMLKHIRESEVQLSIREMYDLWVRKKDTDEHGVKVEMKMWFREVTLNIIFRMVVGKRFTEAFKDEKMNQCIRAMRNLIDLLGAFVPTDYFPFLRWLDLGGFEKAMKKTAEELDQLIENWLDKHKQNRNEKKSKSEQDFMDVMLALFYDGHHGGDDSTSNHASDKIIKATCWSMILAGSDSTAGTMTWTLCLLLNNERVLKEVQRELDEQIGDKRQVNESDLKNLVYLNAIIKESMRLYPITPLAIPHESMEVCNIAGHHIPTRTRLIVNLWKIQRDPRVWKEPEEFRPERFLTTHKDVELSGQHHELMPFGSGRRMCPGVSLALQSMLLSMAALLHGFEISAFSEEALDMRERPGLTSIKETPLEICLKPRLAPHLYA 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1642580 1644060 - Bma018637.1 Bma04g00188 80557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00188 461 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 393 402 IPR017972 GO:0005506|GO:0016705
Bma04g00188 461 PRINTS P450 superfamily signature 259 276 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 PRINTS P450 superfamily signature 400 411 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 PRINTS P450 superfamily signature 391 400 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 PRINTS P450 superfamily signature 312 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 Pfam Cytochrome P450 2 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 SUPERFAMILY Cytochrome P450 1 454 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 PANTHER CYTOCHROME P450 1 460 - -
Bma04g00188 461 Coils Coil 181 212 - -
Bma04g00188 461 Gene3D Cytochrome P450 1 456 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 PRINTS E-class P450 group I signature 311 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 PRINTS E-class P450 group I signature 390 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 PRINTS E-class P450 group I signature 2 21 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 PRINTS E-class P450 group I signature 352 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 PRINTS E-class P450 group I signature 248 265 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 PRINTS E-class P450 group I signature 26 47 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 PRINTS E-class P450 group I signature 268 294 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 PRINTS E-class P450 group I signature 127 145 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 PRINTS E-class P450 group I signature 400 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00188 461 Coils Coil 282 302 - -
Bma04g00188 461 PANTHER CYTOCHROME P450 82C3-RELATED 1 460 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00188 - - - mnt:21404119 531.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00188 Bma-Chr4:1642580 Bma07g01186 Bma-Chr7:46366058 0 dispersed
Bma04g00187 Bma-Chr4:1609049 Bma04g00188 Bma-Chr4:1642580 4.93E-143 tandem
Bma04g00188 Bma-Chr4:1642580 Bma04g00189 Bma-Chr4:1673216 8.39E-167 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g850 . Blo12g00927 . Bda03g00236 . . Bma04g00188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01616 Csa03g04161 Chy04g00555 . . . . . . . . . . . Cmo09g00183 . . . . . . Bhi09g02035 . . . . . . Cla05g01983 . . . . . . . . . Cme04g00662
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00188 Bma_Chr04 FPKM 4.396607 5.344999 3.327315 3.132579 1.443173 1.669255 1.355019 0.916625 0.973481 1.262387