Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00191 ATGCACGGAAAAGACTTTATTTCAAAGTTGGGGATAATGGAGTTCTCTCTTTCATCTTCGGCAACCGCCATGGCTGGAGCTCTTTCATTTCTATTTGTTCTCTGCTCAATGATAAAGATATGGAGGAACTTCAATTACAAGAGACAACCACAGGAAGCTGGCGGGGGGTGGCCTTTGATCGGCCACCTCCACCTACTAAGAGGTACAAAACCCCTCCACTTGATATTGACTGCTATGGCTGACAAATACGGACCCGTCTTTACTATGAGATTAGGTGTTCATAAAATTCTGATTGTTAGCAATTGGGAGATTGCGAAAGAGTGTTTTACTGTAAACGATAAGATTTTCGCCACTCGTCCGAAGTATTTAGCTTTTGAGGTCTTAGGCTACGACTACACAATGATAGGTTTCTGCCTTTATGGACCCGTCTGGCGTCAAGTGAGAAAAATAGCTACCGTCGAGCTACTTTCAAGCCACCGTTTAGGGATGCTCAAACACATCAGGGAATCCGAGGTTCAGCTCTCCATTAGAGAGATGTACGATTCGTGGGTGGGAAAGAAAGACACTGATGAACATGGAGTGAAAGTAGAGATGAAGAGGTGGTTTAGAGATGTTACTCTAAACATGATATTTAGGATGGTGGTGGGGAAGAGATTCACGGAGGCTTTTAAAGGTGAAAAAATGAACCAGTGTAAACGAGCCATGAGGGATCTCATTGATCTACTCGGAGCATTTGTGCCGGCCGATTATTTCCCATTTCTGAGATGGTTGGATTTAGGAGGATTTGAGAAGGTCATGAAAAAGACGGCAGAAGAACTAGATCAACTCATTGAAAACTGGCTTGACGAGCATAAGCAGAACAGAAATGAGAACAAGTCTAAAAGTGAGCAAGACTTCATGGATGTTATGCTAACCCTTTTCCACGACGGCCATCATGGTGGAGATGAATCCACCAACAATCATGCCTCTTATAAGATTATCAAAGCTACTTGCTGGGCTCTGATATTAGCTGGCTCAGACTCGATGGCTGGAACAATGACATGGACGCTCTGTTTACTTCTCAACAACGAACGAGTCCTTAAAGAAGCACAACGTGAGCTAGACGAACAAGTTGGAGACAAAAGGCAAGTAAACGAGTCTGATCTCAAAAACTTGGTTTACCTTAACGCGATCATAAAAGAGAGCATGCGTCTGTATCCAGGTCGCCCCACTCGGGGTTCCCCATGA 1227 44.09 MHGKDFISKLGIMEFSLSSSATAMAGALSFLFVLCSMIKIWRNFNYKRQPQEAGGGWPLIGHLHLLRGTKPLHLILTAMADKYGPVFTMRLGVHKILIVSNWEIAKECFTVNDKIFATRPKYLAFEVLGYDYTMIGFCLYGPVWRQVRKIATVELLSSHRLGMLKHIRESEVQLSIREMYDSWVGKKDTDEHGVKVEMKRWFRDVTLNMIFRMVVGKRFTEAFKGEKMNQCKRAMRDLIDLLGAFVPADYFPFLRWLDLGGFEKVMKKTAEELDQLIENWLDEHKQNRNENKSKSEQDFMDVMLTLFHDGHHGGDESTNNHASYKIIKATCWALILAGSDSMAGTMTWTLCLLLNNERVLKEAQRELDEQVGDKRQVNESDLKNLVYLNAIIKESMRLYPGRPTRGSP 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1696104 1712662 + Bma018640.1 Bma04g00191 80560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00191 408 Gene3D Cytochrome P450 46 406 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00191 408 SUPERFAMILY Cytochrome P450 56 404 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00191 408 Pfam Cytochrome P450 56 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00191 408 PRINTS E-class P450 group I signature 205 223 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00191 408 PRINTS E-class P450 group I signature 346 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00191 408 PRINTS E-class P450 group I signature 104 125 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00191 408 PRINTS E-class P450 group I signature 80 99 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00191 408 PRINTS E-class P450 group I signature 389 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00191 408 PRINTS E-class P450 group I signature 326 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma04g00191 408 PANTHER CYTOCHROME P450 CYP82D47-LIKE 30 403 - -
Bma04g00191 408 Coils Coil 270 297 - -
Bma04g00191 408 Coils Coil 360 380 - -
Bma04g00191 408 PANTHER CYTOCHROME P450 82C3-RELATED 30 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00191 - - - mnt:21404119 423.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00191 Bma-Chr4:1696104 Bma07g01186 Bma-Chr7:46366058 0 dispersed
Bma04g00190 Bma-Chr4:1677943 Bma04g00191 Bma-Chr4:1696104 2.47E-97 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g858 . Blo12g00922 . Bda03g00241 . . Bma04g00191 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1876 . . . Lsi04g01627 Csa03g04169 Chy04g00548 . . . . . . . . . . . Cmo09g00178 . . . . . . Bhi09g02057 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00191 Bma_Chr04 FPKM 41.7831 45.168934 1.400222 1.906921 2.331144 1.593336 2.684709 11.025824 11.369883 10.870835