Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00193 ATGAGAGACGAAGGAGAAGATGAGCGGATGTTCGGGGCGGCAAACAGCATTCCGCGCCCCAAATTCGTCAACGTTTTGCATTCTGATCCCAACATTTCGTCGACAGCCATGGATGAAGATTTCATGATGAGAAAGAGCAGCGCTTCAGCCAGCGCCCACGGTTTTTACGATTCGACCCAAATGACCGGCGATTGCTCTCCCATGACCATGTCCCCGTGGAACCAAACGTCCATGTTTGCACAATCTTCGTGGTCGCAGTTCGAAGAAACCTTGCCCCAGAATCGTATTATAGGCTCTCTGTTACGGGAAGAAGGTCATATTTATTCGCTAGCCGCCTCCGGCGAGCTCTTATACACGGGCTCCGACAGCAAGAACATTCGGGTATGGAAGGACCTGAAAGAATTCACCGGGTTTAAATCAAACAGCGGCTTGGTTAAGGCAATTATAATCTCCGGCGAAAAAATCTTCACCGGCCACCAAGACGGCAAGGTTCGAGTTTGGACCGTTTCCCCGAAAAATCCTGTTATTCATAAACGCACCGGCACTTTACCCACTCTGAAAGACATTTTCAAGAGCTCCATTAATCCGAATAATTACGTGGAAGGTCGACGTCACAGACGAGTTTTGTGGATAAAACATTCCGACGCTGTCTCTGGCCTAACCTTGAGCGAAGATAAGGTGTTTTTATACTCTGCTTCGTGGGATAGAACACTGAAAGTTTGGAGAGTATCGGACTCCAAATGCCTCGAGTCTCTCAAAGTCCACGACGACGCCGTTAATTCAGTGGTGACAGCCGGCGACGAGCTGGTCTTCACCGGTTCAGCGGACGGTACGGTGAAAGTGTGGAGGAGAGAGCAGAAAGGGAAAGCGACGAAACACACTTTGGTTCAAACTCTATTGAAACAAGACTGCGCCGTCACGGCGCTGGCGGTTAACTCCTCCGGTTCGGTGGTTTACAGTGCGTCGTCCAACGGCGTGGTCAACTTTTGGGAGGTAAATAATCAACTTTCTCATGGTGGGGTCCTCAAGGGACACAAGGTTGCGGTTCTCTGCCTAGAGTCTGCAGGGAGTCTACTCTACAGCGGCTCTGCTGATAATACGATTTGTGTATGGAAGAGGGATGGTGTGATCCACACGTGCCTGTCTGTATTGACTGGTCATACTGGGCCGGTCAAGTGTCTGGCGGTGGAGGAGGATCCGGAGTCGTCCAAAGACGGTGATCGACGGTGGATATTGTATAGTGGGAGCCTGGATAAGTCAGTGAAGGTGTGGAGTGTGTCTGAAATGAGCCCTGAGTCTAATCGTGTGGCTATGATGCAACAGCCCTACATGGCTTCCGATGCAGACTCGCTACCGTCCGACGGAAGCGTCTCTTCCGCCGGCAGAGGTAGCCAAAACAAGACCCACTAA 1410 50.99 MRDEGEDERMFGAANSIPRPKFVNVLHSDPNISSTAMDEDFMMRKSSASASAHGFYDSTQMTGDCSPMTMSPWNQTSMFAQSSWSQFEETLPQNRIIGSLLREEGHIYSLAASGELLYTGSDSKNIRVWKDLKEFTGFKSNSGLVKAIIISGEKIFTGHQDGKVRVWTVSPKNPVIHKRTGTLPTLKDIFKSSINPNNYVEGRRHRRVLWIKHSDAVSGLTLSEDKVFLYSASWDRTLKVWRVSDSKCLESLKVHDDAVNSVVTAGDELVFTGSADGTVKVWRREQKGKATKHTLVQTLLKQDCAVTALAVNSSGSVVYSASSNGVVNFWEVNNQLSHGGVLKGHKVAVLCLESAGSLLYSGSADNTICVWKRDGVIHTCLSVLTGHTGPVKCLAVEEDPESSKDGDRRWILYSGSLDKSVKVWSVSEMSPESNRVAMMQQPYMASDADSLPSDGSVSSAGRGSQNKTH 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1718721 1720130 - Bma018642.1 Bma04g00193 80562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00193 469 MobiDBLite consensus disorder prediction 435 469 - -
Bma04g00193 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 251 IPR001680 GO:0005515
Bma04g00193 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 282 IPR001680 GO:0005515
Bma04g00193 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 334 IPR001680 GO:0005515
Bma04g00193 469 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 15 452 IPR045182 -
Bma04g00193 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 372 IPR001680 GO:0005515
Bma04g00193 469 Gene3D - 294 468 IPR015943 GO:0005515
Bma04g00193 469 Pfam WD domain, G-beta repeat 213 241 IPR001680 GO:0005515
Bma04g00193 469 Pfam WD domain, G-beta repeat 340 372 IPR001680 GO:0005515
Bma04g00193 469 Pfam WD domain, G-beta repeat 247 282 IPR001680 GO:0005515
Bma04g00193 469 Pfam WD domain, G-beta repeat 104 130 IPR001680 GO:0005515
Bma04g00193 469 Pfam WD domain, G-beta repeat 379 425 IPR001680 GO:0005515
Bma04g00193 469 MobiDBLite consensus disorder prediction 451 469 - -
Bma04g00193 469 ProSitePatterns Trp-Asp (WD) repeats signature. 318 332 IPR019775 -
Bma04g00193 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 210 247 - -
Bma04g00193 469 CDD WD40 104 425 - -
Bma04g00193 469 SMART WD40_4 204 242 IPR001680 GO:0005515
Bma04g00193 469 SMART WD40_4 93 130 IPR001680 GO:0005515
Bma04g00193 469 SMART WD40_4 292 331 IPR001680 GO:0005515
Bma04g00193 469 SMART WD40_4 335 372 IPR001680 GO:0005515
Bma04g00193 469 SMART WD40_4 377 425 IPR001680 GO:0005515
Bma04g00193 469 SMART WD40_4 245 283 IPR001680 GO:0005515
Bma04g00193 469 SMART WD40_4 131 168 IPR001680 GO:0005515
Bma04g00193 469 PRINTS G protein beta WD-40 repeat signature 229 243 IPR020472 -
Bma04g00193 469 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Bma04g00193 469 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Bma04g00193 469 PANTHER PROTEIN JINGUBANG 15 452 - -
Bma04g00193 469 Gene3D - 73 188 IPR015943 GO:0005515
Bma04g00193 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 434 IPR001680 GO:0005515
Bma04g00193 469 SUPERFAMILY WD40 repeat-like 100 431 IPR036322 GO:0005515
Bma04g00193 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 282 - -
Bma04g00193 469 Gene3D - 198 293 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00193 - - - csv:101212251 692.575
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g00193 Bma05g00099 CCT
Bma04g00193 Bma05g00099 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00193 Bma-Chr4:1718721 Bma05g00090 Bma-Chr5:2919448 0 dispersed
Bma03g00441 Bma-Chr3:3362439 Bma04g00193 Bma-Chr4:1718721 3.21E-78 transposed
Bma04g00018 Bma-Chr4:226013 Bma04g00193 Bma-Chr4:1718721 2.76E-10 transposed
Bma07g00309 Bma-Chr7:3752708 Bma04g00193 Bma-Chr4:1718721 7.78E-08 transposed
Bma12g00483 Bma-Chr12:14084881 Bma04g00193 Bma-Chr4:1718721 1.65E-177 transposed
Bma13g00752 Bma-Chr13:24327032 Bma04g00193 Bma-Chr4:1718721 1.33E-68 transposed
Bma14g01832 Bma-Chr14:39231395 Bma04g00193 Bma-Chr4:1718721 2.47E-75 transposed
Bma04g00193 Bma-Chr4:1718721 Bma05g00099 Bma-Chr5:3229474 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012788 3 1 2 2 1 1 0 1 1 1 1 1 1 0 1 2 1 0 0 1 1 1 1 0 0 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00193 Bma_Chr04 FPKM 2.636972 3.320208 2.839692 2.762235 2.269404 1.874249 2.025071 17.121349 17.708311 18.372332