Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00195 ATGGAGATGGAGGTTGATACGATTAGTGACTTGCCAGGGCATGTTTTGGATCAAATTCTCTCTAAACTGCCGATTAGAGATGCTGTTAGAACGAGTATATTATCGAGCAGATGGAAGTTCAAATGGTCGACCATTCCTCGTCTAATATTTGACAGTCAGTGCGTGTCTATCTCTTCTCACGATCAAAATCAAACACCGCATAATGTACTTGTGAGGATCATCGATCACGTTCTCTTACTCCACCATGCCCCAGTTCTTGATTTCAAACTCTCTCACAAAGATCTTTTTGGTATTAGCGACATTGACAAGTGGATTCGTCATCTTTCAAGAAATGCTATCAGGGAATTGGTTCTTGAAATTTGGAAAGGGAATAGATATCTGATTCCGTCCTCTTTATTTGATTGCCAGTTTTTGGAGAACTTGGAGTTGTATAACTGTCTTATAAAACCTCCGTTATTGCGTAAGAATCTCAGGAGTTTGAAGAGGCTTAATCTTCAACAGGTGACTTTAGCCCAAGATGATTTTGAAAAATTGATTGCTAGCTGCCCTTTGCTTGAGAGGTTGACATTGATGAGTTTTGACGGTTTCACTCATCTCAATATAGATTCGCCGAGTCTTCATTTTTTATGTGTTGGGGGTATTTTTCACGACATCAATTTCAAGAATGCTTTGAATTTGGTTGAAGTTTCTATGGGTTTGTATGCAGATATTGAGCATGACTTGATCCGGGCTTATGGTAAATCTGGCAATTTGTGGAAATTTTTATCTACTCTTCCCCGTGCTCAAAAATTGGAACATTTGGCTTTTGGCACGATTCACTCGAAGCTGCCTAATCTTAGTGTTCATCTGAATTATCTTTCTCTGCACATAAACTTCAATAACTTGGATGAGATTTTAACTTCTTTATGCATCTTAAGAAGCTCTCCAAATCTACAAGTTCTACAAGTACTGGTTCTAATTTGCGAGATGAAGATCACTGCTGGGATCAAAGTTACTCAATTCAGTTACTTACGACTAGTGAAAGTTTTTGGCATCTCTGGTCTAAGATCAGAAATGAATTTCATCAGTTTTCTGCTTGTAAAGGATACTGCCGTAGTACATTGTGGTTTTTTCAGTGAAAATGGGGGATTCAAGGTTTCTGAGGAAGATAAAAATTATTTGCGAACTTGCCAAGTTGTGTTGTCTACATGTGCCTTTGGGGGAGGGGATGATCTTTATCAACCAATCGGAATGTCAAATGCATCACTTCATAAGGTTTGCTATGTTGCATTTTGGGATGAAATTACTTTAAGCGCGCAAGAATCTATGGGACACAAAATTGATGAAGCTGGATTTATTGGAAAGTGGCGAATTGTGGTTGTTAGGGATCTTCCCTTTAGAGACCAGCGGTTGAATGGTAAAATACCAAAGATGCTGGGACATCGTCTCTTTCCCCATGCAAAGTACTCAATTTGGGTGGACTCAAAGTCCCAATTTAGAAGGGACCCTTTAGGAGTGATAGAAGCTCTTCTTTGGCGTTCAAATTCTGTTCTTGCCATTTCAGAACATGGAGCTCGCAGTAGTGTCTATGATGAAGCAAAAGCTGTGGTTAAAAAACACAAAGCCACTCCGGAAGAAGTTGAGGTCCAGCTGACTCAGTACCAGAACGATGGCTTACCAGAAGACAAGCGATTTAATGGGAAGAAAGCTTTATCCGAAGCCTCAGTGATCGTGCGGGAGCACAATCCGACAACAAATCTATTCATGTGCCTCTGGTTTAACGAGGTGGTCAGATTCACGTCTCGAGACCAGCTGAGCTTTCCGTACGTTCTCTGGCGGTCCAAATTACTGAAAAACATCAACATGTTCCCTGTTTGCACTCGCAAAGATCTAGTTAACAGCATGGGTCATATTCGCAAAGCAAAGCCTTTGATTACTTGA 1920 40.42 MEMEVDTISDLPGHVLDQILSKLPIRDAVRTSILSSRWKFKWSTIPRLIFDSQCVSISSHDQNQTPHNVLVRIIDHVLLLHHAPVLDFKLSHKDLFGISDIDKWIRHLSRNAIRELVLEIWKGNRYLIPSSLFDCQFLENLELYNCLIKPPLLRKNLRSLKRLNLQQVTLAQDDFEKLIASCPLLERLTLMSFDGFTHLNIDSPSLHFLCVGGIFHDINFKNALNLVEVSMGLYADIEHDLIRAYGKSGNLWKFLSTLPRAQKLEHLAFGTIHSKLPNLSVHLNYLSLHINFNNLDEILTSLCILRSSPNLQVLQVLVLICEMKITAGIKVTQFSYLRLVKVFGISGLRSEMNFISFLLVKDTAVVHCGFFSENGGFKVSEEDKNYLRTCQVVLSTCAFGGGDDLYQPIGMSNASLHKVCYVAFWDEITLSAQESMGHKIDEAGFIGKWRIVVVRDLPFRDQRLNGKIPKMLGHRLFPHAKYSIWVDSKSQFRRDPLGVIEALLWRSNSVLAISEHGARSSVYDEAKAVVKKHKATPEEVEVQLTQYQNDGLPEDKRFNGKKALSEASVIVREHNPTTNLFMCLWFNEVVRFTSRDQLSFPYVLWRSKLLKNINMFPVCTRKDLVNSMGHIRKAKPLIT 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1730702 1742769 - Bma018644.1 Bma04g00195 80564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00195 639 Pfam F-box domain 8 40 IPR001810 GO:0005515
Bma04g00195 639 Gene3D Ribonuclease Inhibitor 76 364 IPR032675 -
Bma04g00195 639 SUPERFAMILY RNI-like 108 315 - -
Bma04g00195 639 SUPERFAMILY F-box domain 4 49 IPR036047 GO:0005515
Bma04g00195 639 Pfam Protein of unknown function (DUF616) 359 630 IPR006852 -
Bma04g00195 639 PANTHER ALKALINE CERAMIDASE-RELATED 360 637 IPR006852 -
Bma04g00195 639 ProSiteProfiles F-box domain profile. 5 39 IPR001810 GO:0005515
Bma04g00195 639 PANTHER OS01G0749100 PROTEIN 360 637 - -
Bma04g00195 639 Pfam Leucine Rich Repeat 159 183 IPR013101 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00195 - - - csin:114294646 512.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01343 Bma-Chr2:55906214 Bma04g00195 Bma-Chr4:1730702 2.92E-14 dispersed
Bma04g00195 Bma-Chr4:1730702 Bma14g01011 Bma-Chr14:11781460 3.27E-58 dispersed
Bma04g00195 Bma-Chr4:1730702 Bma13g00955 Bma-Chr13:40725174 5.28E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g870 Blo01g01548 Blo12g00917 . Bda03g00247 . . Bma04g00195 . . . . . Car01g01468 . . . . . . . . . . . . . . . . . . . . . Cone20ag0159 . Csa04g02345 Chy04g00541 . . . . . . . . . . Cmo01g01947 . . . . . . Cpe02g00147 . . . . . . . . . . . . . . . . Chy07g00077 Cme04g00631
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012789 1 5 1 1 0 0 1 0 0 1 0 0 0 1 1 1 0 1 1 0 1 0 0 3 2 1 1 3 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00195 Bma_Chr04 FPKM 9.248889 9.903949 8.119075 6.293921 8.192322 10.728051 9.005366 5.780929 5.25727 5.594973