Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00196 ATGAGATCTATGGAAGAAAAGGCTATTTCCAAAAATGTAGTTACTTACTCCCTCTTGATAAAAGGATTTTGCAAGCAAGGTAAGATAGAAGAGGCAGAGAATGTGCTTAAGCTCATCGAGAAGGAGTCTATTGATTTGGATGAACATGTGTTTGGCACAATTATACACATGTATTGTAAAGTTGTTAGAATGGATGATGCTATTAGGATTGTGGATATGATGTTAAAAACAGGGTTGAAGATAAATAATGTTATTTCAAACTCATTAATTTATGGGTATTGTAAACTCGGCCAACTTCGCAAAGCAGATGAAGTGTTAATATGTATGAGAGACTGGAATTTGCGGCCAGATTCTTATACTTATTGCACTCTTGTTAATGGTTGTTGTAGCCTAGGTTATATACATGAAGCCTTGAAGCTTTGTGATAAAATGCTTGAGGAAGGAGTGGATCCTACTGTTGTAACTTATAATATCCTTCTCAAGGGTTTCTGCAAAGCAGGTACAATTGATGATGTTTTACACATATGGAACATGATGCTTCAAAGAGGTGTCACCCCTAATCAGGTGAGCTACTGTACTCTGTTGAATAAATTGTTCAAAATGGGTCAATTTGATAGGGCTATAGCTTTATGGAAAGAAATGTTAATGATAGGTTTTACTAAGAGCACAACCGCTTACAATACAATGATTAATGGCTTCTGTAAGATGGGAAAATTAGCTCAGGCAAAAGAGATATTCAACATGATGAAGGAAGTAAGATGTCCACTTGATGATATAACGTATAGAACTCTAATCGATGGATATGTCAAAGTCGGAGACGTTGACGAGGCTCTCAAATTAAAGGATGTGATGGAGAAGGAAGGTGTAGTTCCATCATAG 879 36.29 MRSMEEKAISKNVVTYSLLIKGFCKQGKIEEAENVLKLIEKESIDLDEHVFGTIIHMYCKVVRMDDAIRIVDMMLKTGLKINNVISNSLIYGYCKLGQLRKADEVLICMRDWNLRPDSYTYCTLVNGCCSLGYIHEALKLCDKMLEEGVDPTVVTYNILLKGFCKAGTIDDVLHIWNMMLQRGVTPNQVSYCTLLNKLFKMGQFDRAIALWKEMLMIGFTKSTTAYNTMINGFCKMGKLAQAKEIFNMMKEVRCPLDDITYRTLIDGYVKVGDVDEALKLKDVMEKEGVVPS 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1744152 1745030 + Bma018645.1 Bma04g00196 80565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00196 292 Coils Coil 29 49 - -
Bma04g00196 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Bma04g00196 292 SUPERFAMILY HCP-like 115 251 - -
Bma04g00196 292 Gene3D Tetratricopeptide repeat domain 204 292 IPR011990 GO:0005515
Bma04g00196 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Bma04g00196 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Bma04g00196 292 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 3 218 - -
Bma04g00196 292 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 65 292 - -
Bma04g00196 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Bma04g00196 292 Pfam PPR repeat family 11 60 IPR002885 -
Bma04g00196 292 Pfam PPR repeat family 83 130 IPR002885 -
Bma04g00196 292 Pfam PPR repeat family 151 199 IPR002885 -
Bma04g00196 292 Pfam PPR repeat family 222 270 IPR002885 -
Bma04g00196 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Bma04g00196 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 12 46 IPR002885 -
Bma04g00196 292 TIGRFAM PPR: pentatricopeptide repeat domain 50 82 IPR002885 -
Bma04g00196 292 TIGRFAM PPR: pentatricopeptide repeat domain 87 117 IPR002885 -
Bma04g00196 292 TIGRFAM PPR: pentatricopeptide repeat domain 14 47 IPR002885 -
Bma04g00196 292 TIGRFAM PPR: pentatricopeptide repeat domain 189 215 IPR002885 -
Bma04g00196 292 TIGRFAM PPR: pentatricopeptide repeat domain 119 152 IPR002885 -
Bma04g00196 292 TIGRFAM PPR: pentatricopeptide repeat domain 154 187 IPR002885 -
Bma04g00196 292 TIGRFAM PPR: pentatricopeptide repeat domain 259 292 IPR002885 -
Bma04g00196 292 TIGRFAM PPR: pentatricopeptide repeat domain 225 257 IPR002885 -
Bma04g00196 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 47 81 IPR002885 -
Bma04g00196 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Bma04g00196 292 Gene3D Tetratricopeptide repeat domain 100 203 IPR011990 GO:0005515
Bma04g00196 292 Gene3D Tetratricopeptide repeat domain 1 99 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00196 - - K17964 qsu:112011836 362.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00196 Bma-Chr4:1744152 Bma14g00756 Bma-Chr14:8403466 6.06E-07 dispersed
Bma04g00196 Bma-Chr4:1744152 Bma01g01883 Bma-Chr1:69321843 1.73E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g881 . . . . . . Bma04g00196 . . . . . Car01g01470 . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00538 . . . . . . . . . . Cmo01g01949 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00196 Bma_Chr04 FPKM 0.868766 0.467171 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0