Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00199 ATGCTGAAAGAAAATCTCACACGCATCAACATAACAAGAAACCGCATCCTGCTCGACGGCCTCGATCCCCCGGTATCGGAATCTCCAGCTGTCGATTCTCTTTATGGAATATCAATCGAGGATGCGAGAAAGATTCTGAAGCTTTCCCACTTGGAGAAACTCAAAAGGAAGTTAAGAGATCTCCAGAAGAACTCGATTTCGTACTCGGATTTCACTAAAATCTGCATTCAAACGTGTGAAAACGACGATCGGGGCACTGAGTTTGCCCGAATGCTGGACGAAACGGGAAGCGTCATCATTCTCGGAAATATTGTATTCCTCCAACCCGAACAGTATAAGGAAATTAATTTGGTTTATGTAACATTTAAGCTTGGAGAGCCACCTTTGACCTCCCTTCCTGGCATTCCTATTTGCAATCCTAACAGCAATCCTCCAATTTTGGGTGATTGTTGGTATAACTGCACTATTGAAGATATATCAGGGGAAGACAAAAGGCATCGCCTACACAAGGCTTTAGGACAGACAGCAGACTGGTTCAAGAGCGCTTTAGCTGTCGAACCAGTGAAAGGGAACTTGAGGCTAAGTGGGTATTCTGCTTGCGGCCAAGATGGCGGTGTACAACTTCCTCGCGAATATATTGAAGAGGGTGTTGCTGATGCTGATTTGGTTCTACTAGTGACCACAAGACCCACCACTGGGAATACTCTTGCATGGGCAGTGGCTTGTGAACGTGATCAATGGGGACGCGCAATTGCTGGTAGGCACGTGAATGTTGCTCCTCGACATTTGACTGCCGAGGCTGAAACTTTACTATCAGCTACTCTTGTACACGAGGTCCTACATGTTCTTGGTTTTGATCCCCATGCCTTCGCCCATTTCAGAGATGAGCGGAAAAGAAGACGCACTCAACAGGTTACAGAAAACGTAATGGATGAGAAGCTTGGACGAATGGTCACAAGAGTGGTGCTTCCTCGTGTTGTTATGCATTCTCGATATCATTATGCGGCATTTTCAGAGAACTTTACAGGTTTGGAGCTAGAAGATGGAGGGGGACGTGGCACATCAGGATCTCATTGGGAGAAAAGGCTTCTGATGAATGAAATTATGACTGGTTCAGTTGATACCCGATCTGTAGTTTCAAAAATGACACTCGCTTTGTTGGAAGATAGTGGATGGTACCGGGCCAATTATAGTATTGCAGACCGTCTTGATTGGGGTCGTAACCAAGGAATTGATTTTGTTAAATCACCTTGCAATCTCTGGAAGGGAGCATATCATTGTAACTCAACTCAATTGTCAGGCTGTACATATAATAGGGAGGCAGAGGGTTATTGCCCAATAGTAAGTTACAGTGGCGACCTTCCTCAATGGGCCCAATATTTTCCTCAGCCCAACAAGGGTGGGCAGTCATTGTTGGCTGATTACTGCACATACTTTGTAGCTTATTCCGATGGATCATGTACAGATACAAACAGTGCTCGTCCACCTGACAGAATGCTGGGTGAAGTGCGGGGAGATAACTCAAGGTGTATGACATCATCACTTGTACGAACTGGGTTTGTTCGAGGTTCTACAACCCAAGGCAATGGCTGTTATCAGCACAGATGCGTCAACAATTCCTTGGTGGTTGCTGTGGATGGTATGTGGAAAGTTTGCCCTGAAGCTGGTGGCCCAGTTCAATTTTCAGGTTTCAATGGTGAATTGATCTGCCCCTCATATCATGAACTTTGTAGCACAGACCCAGTTCCAGTATCAGGGCAGTGTCCCAATTCTTGTAATTTCAATGGAGATTGTGTTAATGGACGGTGCTTCTGTTTCCTAGGGTATCATGGCAACGACTGTCTCAAACGGGCTTGTCCTAATCAATGTCATGGACATGGGAGATGCCTTTCTAATGGAATTTGTGAATGTGAAAATGGCTTCACTGGCATTGACTGCTCTACTGCTGTTTGTGATGAGCAGTGTAGCCTCCATGGCGGGGTGTGCGATAATGGTGTATGCGAATTCAGATGCTCCGACTATGCAGGCTATTCCTGCCAAAACAGCTCCGGCCTTCTCTCCACTCTTTCGGTTTGCAAAAATGTTCTCAAAAGAGACATCCCCGGTCAGCACTGTGCTCCTAGTGAACCAAGTATTTTACAGCAGCTCGAAGTAGTAGTCGTTATGCCTAATTACCATCGTTTATTCCCCGGCGGTGCGAGAAAATTGTTCAATATCTTTGGTAGCGGCTACTGTGATTCCGCCGCAAAGCGGTTGGCTTGCTGGATATCTATCCAGAAGTGTGATCAAGATGGTGACAATAGGCTCAGAGTGTGCCAATCGGCATGTCAGTCGTATAATTTAGCGTGCGGGGCTTCACTCGACTGCTCAGATCAGACACTCTTCAGCAGCGAAGAGGAGGGCATCGAACAATGCACGGGTTTCACCGAGATGAAATCGTCATGGTTTAATTGGCTGCGAAGTAACGTATTTTCAAGGAGTAGTTCCTCCAGAAGAGGGTCTGTAAAATATCTGTAG 2517 46.05 MLKENLTRINITRNRILLDGLDPPVSESPAVDSLYGISIEDARKILKLSHLEKLKRKLRDLQKNSISYSDFTKICIQTCENDDRGTEFARMLDETGSVIILGNIVFLQPEQYKEINLVYVTFKLGEPPLTSLPGIPICNPNSNPPILGDCWYNCTIEDISGEDKRHRLHKALGQTADWFKSALAVEPVKGNLRLSGYSACGQDGGVQLPREYIEEGVADADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGRHVNVAPRHLTAEAETLLSATLVHEVLHVLGFDPHAFAHFRDERKRRRTQQVTENVMDEKLGRMVTRVVLPRVVMHSRYHYAAFSENFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYRANYSIADRLDWGRNQGIDFVKSPCNLWKGAYHCNSTQLSGCTYNREAEGYCPIVSYSGDLPQWAQYFPQPNKGGQSLLADYCTYFVAYSDGSCTDTNSARPPDRMLGEVRGDNSRCMTSSLVRTGFVRGSTTQGNGCYQHRCVNNSLVVAVDGMWKVCPEAGGPVQFSGFNGELICPSYHELCSTDPVPVSGQCPNSCNFNGDCVNGRCFCFLGYHGNDCLKRACPNQCHGHGRCLSNGICECENGFTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYSCQNSSGLLSTLSVCKNVLKRDIPGQHCAPSEPSILQQLEVVVVMPNYHRLFPGGARKLFNIFGSGYCDSAAKRLACWISIQKCDQDGDNRLRVCQSACQSYNLACGASLDCSDQTLFSSEEEGIEQCTGFTEMKSSWFNWLRSNVFSRSSSSRRGSVKYL 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1757973 1767460 - Bma018648.1 Bma04g00199 80568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00199 838 ProSitePatterns EGF-like domain signature 2. 635 646 IPR000742 -
Bma04g00199 838 Gene3D Leishmanolysin , domain 2 292 418 - -
Bma04g00199 838 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 121 811 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Bma04g00199 838 ProSiteProfiles EGF-like domain profile. 615 647 IPR000742 -
Bma04g00199 838 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 142 584 - -
Bma04g00199 838 PRINTS Leishmanolysin (M8) metalloprotease family signature 381 410 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Bma04g00199 838 PRINTS Leishmanolysin (M8) metalloprotease family signature 226 255 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Bma04g00199 838 Gene3D Leishmanolysin domain 3 422 480 - -
Bma04g00199 838 Gene3D - 136 282 - -
Bma04g00199 838 Gene3D Laminin 587 615 - -
Bma04g00199 838 Gene3D Laminin 618 649 - -
Bma04g00199 838 Pfam EGF-like domain 619 646 IPR013111 -
Bma04g00199 838 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 121 811 - -
Bma04g00199 838 Gene3D Leishmanolysin domain 4 482 577 - -
Bma04g00199 838 Pfam Leishmanolysin 152 578 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Bma04g00199 838 SMART egf_5 576 615 IPR000742 -
Bma04g00199 838 SMART egf_5 618 647 IPR000742 -
Bma04g00199 838 ProSitePatterns EGF-like domain signature 1. 635 646 IPR000742 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00199 K01404 GP63; leishmanolysin [EC:3.4.24.36] - csv:101217702 1318.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00199 Bma-Chr4:1757973 Bma09g00354 Bma-Chr9:30484278 1.22E-19 dispersed
Bma01g02303 Bma-Chr1:80599845 Bma04g00199 Bma-Chr4:1757973 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g891 . Blo12g00913 . . . . Bma04g00199 . . . Cma01g01888 Cma09g00174 Car01g01472 . . Cpe06g00124 . . . . . . . . . . . . . . . . Cone7ag1802 Cone17ag1321 Cone20ag0155 Lsi04g01639 Csa03g04182 Chy04g00535 . Blo17g00814 . Bda08g01299 . . . . . . Cmo01g01951 Cmo09g00171 . . . Car09g00156 . Cpe02g00144 . . . . . . . Cla05g01963 Cam05g2113 Cec05g2124 Cco05g2177 Clacu05g2102 Cmu05g1978 Cre05g2097 . . . Cme04g00615
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004346 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00199 Bma_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0