Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00205 ATGGCGGAAGTAGAGAATTCTTCGTCGATTGCACTTTCTACCGCTTCTGCAGAAGCTGGAGTCTCTTCTTCAGGGTTTCAAATGGAGCCAGTACCAGAGATACCAACGAAGAAGAAGCGAAACCTCCCGGGAATGCCAGATCCGGATGCGGAGGTGATTGCTTTGTCTCCAAAAACACTGATGGCGACCAATCGGTTCGTGTGCGAGATCTGCAACAAAGGATTTCAGCGGGACCAGAATCTGCAGCTTCATCGGAGAGGGCACAACTTGCCGTGGAAGCTCCGGCAACGGACGAGCAAAGAGGTGCGGAAAAGAGTCTACGTCTGCCCGGAGGCTTTATGCGTTCACCACGATCCGGCGAGAGCTCTAGGCGATCTCACCGGAATAAAGAAGCATTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGCGATGCTCGAAGAAATACGCCGTACAGTCCGATTGGAAGGCGCACATGAAAACTTGCGGAACACGAGAGTATAAATGCGATTGTGGCACTCTATTTTCTAGGAGGGACAGCTTCATCACCCACAGAGCTTTCTGCGATGCTTTAGTGGAGGAAAGTGCTCGAGCCCATCAAACCCTAGCAATCTCCAACGTAGAAGGAAAAGGAAATGATTCTTCTGTAAAAATGATTGTGGCTTCACCGCCTCCACCGCCGCTTACGCCGTCCAACACAGTTGTTTCTCCAGCTTTGTCCATTCAAAGTTCGGAGTTGCCAGAGAACCCAATCGGAGTGTCGCCGTCGGCTCTGAACTCGACCGCCATTAATAATCCTATTCCAAGCAACAACTGCAGTAGTGTATTTGCTAGTGTATTTGCATCTACTTCCACAGCTTCAATCTCTCATCAAACAGGGACTTCCCCTCCTCCTTCATTCTCCACTCTAGTCTCCACCTTTACCAGCTCTGATATTACTCCTAATATCCCTGCAATGTCCGCCGTTGAACCAACCTCACTTTCTCTTGCCTCCTCACTCTATCTCCCGACCAAGAGTTTCTCTCTCTATACTTCTTCCGAACTAGACCACCGCCATTTCACCCCGACTTTTCAGTCGCCTGCCATGTCTGCAACAGCGTTGCTTCAAAAGGCAGCGCAAATGGGCGCTGCCGAATCTAGCGCTTCGTTGCTTCGCAGGTTTGGGTTAGCCATGTCTTCTCCCTCAGCTCAAGAAACAATTTCTAATCACCATTGGAGTGGTAACACAAAGCTAGAGAGCAGCAGAGCCTTTTTAACCGCTGGGTTAGGGCTAGGAATTCCATCTCCAGCTTCTAGTTTAAACGATGCAATGATGGTTTCGTCGTCTCCGTTCGGCAATCAGTTAATGACACGTGATCTTCTAGGGCTCGGCATTGGAGAAACTGCGGCTTCCACCACTGGACTCTCTGCGTTGCTCACTTCATTCGGGAGTGGCTTTGAAGTTGCCGCCTTTGCAACTTATGGAGGAGGAGGAAGCGCTGGTGGAGCTGAGTCTGGAAGCAACATGGACAATGGTTGTACAAAGACAGAAAGCCAAGAGGACCCACTTTTCTCTAATCCGCCATAA 1572 50.06 MAEVENSSSIALSTASAEAGVSSSGFQMEPVPEIPTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEALCVHHDPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALVEESARAHQTLAISNVEGKGNDSSVKMIVASPPPPPLTPSNTVVSPALSIQSSELPENPIGVSPSALNSTAINNPIPSNNCSSVFASVFASTSTASISHQTGTSPPPSFSTLVSTFTSSDITPNIPAMSAVEPTSLSLASSLYLPTKSFSLYTSSELDHRHFTPTFQSPAMSATALLQKAAQMGAAESSASLLRRFGLAMSSPSAQETISNHHWSGNTKLESSRAFLTAGLGLGIPSPASSLNDAMMVSSSPFGNQLMTRDLLGLGIGETAASTTGLSALLTSFGSGFEVAAFATYGGGGSAGGAESGSNMDNGCTKTESQEDPLFSNPP 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1788132 1790269 - Bma018654.1 Bma04g00205 80574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00205 523 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Bma04g00205 523 Gene3D Classic Zinc Finger 46 112 - -
Bma04g00205 523 MobiDBLite consensus disorder prediction 499 523 - -
Bma04g00205 523 MobiDBLite consensus disorder prediction 1 23 - -
Bma04g00205 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Bma04g00205 523 MobiDBLite consensus disorder prediction 1 46 - -
Bma04g00205 523 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 9 498 - -
Bma04g00205 523 SMART c2h2final6 66 88 IPR013087 -
Bma04g00205 523 SMART c2h2final6 142 162 IPR013087 -
Bma04g00205 523 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Bma04g00205 523 Gene3D Classic Zinc Finger 121 200 - -
Bma04g00205 523 MobiDBLite consensus disorder prediction 495 523 - -
Bma04g00205 523 Pfam Zinc-finger of C2H2 type 66 88 - -
Bma04g00205 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 498 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00205 Bma-Chr4:1788132 Bma09g00064 Bma-Chr9:1635027 7.52E-166 dispersed
Bma07g01503 Bma-Chr7:50640066 Bma04g00205 Bma-Chr4:1788132 2.27E-95 dispersed
Bma08g00129 Bma-Chr8:1683055 Bma04g00205 Bma-Chr4:1788132 4.78E-75 dispersed
Bma10g01054 Bma-Chr10:29024467 Bma04g00205 Bma-Chr4:1788132 1.02E-101 dispersed
Bma12g01274 Bma-Chr12:45750425 Bma04g00205 Bma-Chr4:1788132 5.36E-75 dispersed
Bma04g00205 Bma-Chr4:1788132 Bma09g00070 Bma-Chr9:1759035 4.55E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57119 PF12874 zf-met 0.0038 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00205 K25869 - qsu:112041099 571.237