Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00208 ATGGTGGAAGTGCGATGCTGTGAGTCGGAATTCTTTCTGATCGTGGTCGCCATAATTGGGTTGGTAACGTTAGCCGGATTAATGGCCGGACTGACTTTGGGTCTAATGTCTTTGGGTCTCGTCGACCTTGAGGTTCTGATCAAGTCCGGCACACTTCGAGATCGGAAATACGCCGCAAAAATATTCCCTGTGGTGAAGAATCAGCATCTTCTTCTTTGTACGCTTTTGATTGGTAACTCTTTAGCAATGGAGACGCTTCCGATATTCTTGGATAAGATCGTCCCTTCATGGGCAGCTATTGTCATATCAGTCACTTTAATCCTCATGTTTGGAGAGATCTTGCCTCAAGCTATCTGTACTCGATATGGACTTAAAGTTGGAGCATTAATGGCTCCATTTGTCCGTGTTCTTCTTATGCTTTTCTTCCCCATTTCCTATCCTATCAGTAAGGTATTAGATTGTATGCTAGGAAAGGGCCACGCTGTCCTTTTAAGACGAGCGGAGCTTAAAACGTTTGTAACTTTTCATGGAAACGAGGCTGGTAAAGGTGGAGACTTAACACATGACGAGACTACAATCATAACTGGTGCGCTTGAATTGACTGAAAAAACAGCAAAAGATGCAATGACTCCTATATCAAATGCATTTTCCCTTGATCTCGATGCAGTTCTTGATTTGTGGGTTCTGTGTCTGACCTCTGCGTCCTACTTTTGTTCTAACAAATTGCTTTCTTATCGTAGGGAAACATTAAATGCAATCATGTCTAAAGGTCATAGTAGAGTTCCTGTTTATTCTGGAAATTCCGCAAATATAATTGGACTTGTTCTGGTTAAGAATCTCCTGTCAGTTGATCCGGATGATAAAATTATCCTGAGACAACTGATCATAAGAAAAATTCCTCGGGTATCTGAAGATATGCCGCTCTATGATATTCTAAATGAATTCCAGAAAGGGCACAGTCACATCGCAGTTGTGTTCAAAGATGTAAATAAGAAAAATGAAGCAACTAAGAAAGACAAAGACTCTGAAGAGCGTGGTTCTAAGGGCAATTACAAAAAACAGACCGGCCAATCTGAGACTCTGTCTAAAAAAGCTTTGAGTGGAGGTCAACAGATGAAGAAAACTCCACCTGCCACTCCGGCTTATAGAAAACGACATAAAGGATGTTCATTTTGCATATTGGATATCGAAAAGGCTCCTATTCCAGAGTTCCCGTCTAATGAAGAGGTTGTTGGTGTAATTAGCATGGAAGATGTTATAGAAGAACTGCTTCAGGAGGAGATCTTAGATGAAACTGATGAGTATGTGAATATCCACAACAGGTATAGTTTGAAAAATCCATAG 1344 40.85 MVEVRCCESEFFLIVVAIIGLVTLAGLMAGLTLGLMSLGLVDLEVLIKSGTLRDRKYAAKIFPVVKNQHLLLCTLLIGNSLAMETLPIFLDKIVPSWAAIVISVTLILMFGEILPQAICTRYGLKVGALMAPFVRVLLMLFFPISYPISKVLDCMLGKGHAVLLRRAELKTFVTFHGNEAGKGGDLTHDETTIITGALELTEKTAKDAMTPISNAFSLDLDAVLDLWVLCLTSASYFCSNKLLSYRRETLNAIMSKGHSRVPVYSGNSANIIGLVLVKNLLSVDPDDKIILRQLIIRKIPRVSEDMPLYDILNEFQKGHSHIAVVFKDVNKKNEATKKDKDSEERGSKGNYKKQTGQSETLSKKALSGGQQMKKTPPATPAYRKRHKGCSFCILDIEKAPIPEFPSNEEVVGVISMEDVIEELLQEEILDETDEYVNIHNRYSLKNP 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1810479 1813288 - Bma018657.1 Bma04g00208 80577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00208 447 Gene3D - 188 347 IPR046342 -
Bma04g00208 447 ProSiteProfiles CNNM transmembrane domain profile. 7 190 IPR002550 -
Bma04g00208 447 MobiDBLite consensus disorder prediction 334 383 - -
Bma04g00208 447 Pfam Cyclin M transmembrane N-terminal domain 17 188 IPR002550 -
Bma04g00208 447 SUPERFAMILY CBS-domain pair 247 425 IPR046342 -
Bma04g00208 447 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE, EXPRESSED-RELATED 3 442 - -
Bma04g00208 447 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 3 442 IPR045095 GO:0010960
Bma04g00208 447 MobiDBLite consensus disorder prediction 334 350 - -
Bma04g00208 447 MobiDBLite consensus disorder prediction 351 374 - -
Bma04g00208 447 CDD CBS_pair_CorC_HlyC_assoc 204 325 IPR044751 -
Bma04g00208 447 Gene3D - 384 431 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00208 K16302 CNNM; metal transporter CNNM - tcc:18591381 587.415
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02320 Bma04g00208 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00208 Bma-Chr4:1810479 Bma08g00668 Bma-Chr8:41171593 4.58E-14 dispersed
Bma14g00305 Bma-Chr14:3824824 Bma04g00208 Bma-Chr4:1810479 1.53E-06 dispersed
Bma03g01522 Bma-Chr3:48897944 Bma04g00208 Bma-Chr4:1810479 3.16E-139 transposed
Bma04g01184 Bma-Chr4:31673591 Bma04g00208 Bma-Chr4:1810479 1.86E-129 transposed
Bma05g00943 Bma-Chr5:47454042 Bma04g00208 Bma-Chr4:1810479 3.16E-129 transposed
Bma08g00022 Bma-Chr8:403065 Bma04g00208 Bma-Chr4:1810479 7.47E-154 transposed
Bma09g00162 Bma-Chr9:5664458 Bma04g00208 Bma-Chr4:1810479 4.90E-149 transposed
Bma01g02320 Bma-Chr1:80712772 Bma04g00208 Bma-Chr4:1810479 3.85E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g942 . Blo12g00909 Bda01g00530 Bda03g00259 Bpe02g00392 Bpe04g00212 Bma04g00208 Bma01g02320 . . Cma01g01908 . Car01g01490 . . . . . . . . . . . . . . . . . . . . Cone17ag1339 . Lsi04g01664 Csa03g04207 Chy04g00511 . . . . . . . . . . Cmo01g01971 . . . . . . Cpe02g00128 . . . . . . . Cla05g01942 Cam05g2085 Cec05g2098 Cco05g2152 Clacu05g2080 Cmu05g1955 Cre05g2075 . . . Cme04g00566
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009053 2 3 1 2 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00208 Bma_Chr04 FPKM 5.393898 5.352483 6.21735 5.20139 7.908188 9.715842 8.476369 12.371299 11.14572 11.133308