Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00209 ATGGTTGTTATTTACTTCTTTACTATAAGTTTCTGGACAAAGGCCGGATGTTCAACCAAGAAACTTGAATTTGAAGTGCTTCTTCGTGTGTCCCTTGATAGATTTCGAGGTTTGGAATTTGACATGGTTCACTGTGCTCTCTTTAGATTGACCAACAAGGTGGTTATCATTAGCATAAGTGCATTGAAATCACGAATAAAATTGCAATCATATGAGGATTTCAATACATTTTTTTTCTGGCGATCAGGAGCTAATTGGCTGAGTTATTCGATGGGCGAGAGCCACGAGACTACTACTGCGGGGATAAATCCACCTTCTTCTCTCCATGCAGTCCACAGTGAGTGTGGTCAAGAATGGTGTAATTTGGCATTGCAGGGAGGACATAAAATCGATATAAGAAAACAGATGTTTTGCAATCGGCCTTTGAATATGAAGAACATCCGTGCTGTAGGGTTTGACATGGATTACACATTGGCACAATACAAGCTTGAAACTTTTGAAACTCTCACGTATGAAGGCACAATAAAAAAATTGGTGTATGACTTGGGATATCCTCAAGAGTTACTAGATTGGTCATTTGATTGGAATTACATGGTCAGAGGCTTGGTTCTTGACAAAAAAAGAGGAAACATCTTGAAGATGGATCAACATAAGTATGTTAAAGTAGCCTACCATGGATTCAAGGAATTATCCAAGGAAGTTAAAGTTGCGACGTATGGAAATACTCTAGTAAGGGATTCTTTTGATGAGCCCGGTTATGCTCTCATCGATACCCTCTTTTCACTCGCTGAAGCCTACATGTTTGCTCAACTGGTTGAGTTTAAAGATAGTAATCCAGAAAAAGTCCCAGATTATACTCATATGTACAAAGATGTTCGAGCTGCAGTTGATTTGTGCCATCGCGATGGAACTCTGAAGCTAATGGTTGCTAAAGATCCTAAAAGGTATATAAATGAAGACAATTCTTTAGTACCGATGCTGAAAATGTTTAAAGATTCTGGTCGTTTTACTTTCTTGGCAACAAACAGTTTATGGGATTATACTAACATTGTGATGAATTTCCTTTGTTGCTCAAGAACAATGGATGGTGTTAACAAATGCACTTTTGACTGGCTTCAGTATTTTGACATTGTCATTACTGGCTGTAACAAACCAAGCTTTTTTCATGAGGACAAGCATTCTAATCTATTTGAGGTTGAGCTAGAGTCAGGAATGCTTATTAATACTAATAACGGCTCTCCTATTACCCAGGTGGGAAGTTTCTCGGGAGTTAACAAGACCTGTAAAGTTTTCCAGGGAGGCAATGTTGCACATCTGCATAGACTTTTTTCTATCGAGTCAAGCTCCCAGGTTCTCTATGTTGGGGATCACATCTATGGGGATATACTGCGGAGCAAGAAGGCTCTTGGATGGAGAACAATGCTCGTTGTTCCAGAGCTTGAAAGAGAGATTGAACTCCTCTTGGAATTGAAGAATACATGCAAGGAACTTCAGTCATTAAGAAGCGAAAACGACCGCATTGACAACAAATTACATCACTTAAAGTGGCGACTCAAGTATGACATCGATGATGACAATGATAATGAGAAGCGGAAATCATCTTCTCATCATGATGCATTGCAGGCTCAAAGGGAGAAAGCTCGGCTCAACCATCAACTTGCTCATCTGGCATATCATCAAAAGTTTCACAAGATTTGGGGACAACTCATGAAAACTGGTTACCAAAACTCCCGCTTTGCTCATCAGGTTGAAAGATTTGCCTGCCTTTACACCAGTCAAGTCACCAACTTAGGCCTCTATTCCCCAGATAAATATTTCAGACCACATGAAGATTTCATGGCCCATGAATGGCAGACCTTGGCTGTTCAAGAGAAGCTTTATTAG 1884 39.86 MVVIYFFTISFWTKAGCSTKKLEFEVLLRVSLDRFRGLEFDMVHCALFRLTNKVVIISISALKSRIKLQSYEDFNTFFFWRSGANWLSYSMGESHETTTAGINPPSSLHAVHSECGQEWCNLALQGGHKIDIRKQMFCNRPLNMKNIRAVGFDMDYTLAQYKLETFETLTYEGTIKKLVYDLGYPQELLDWSFDWNYMVRGLVLDKKRGNILKMDQHKYVKVAYHGFKELSKEVKVATYGNTLVRDSFDEPGYALIDTLFSLAEAYMFAQLVEFKDSNPEKVPDYTHMYKDVRAAVDLCHRDGTLKLMVAKDPKRYINEDNSLVPMLKMFKDSGRFTFLATNSLWDYTNIVMNFLCCSRTMDGVNKCTFDWLQYFDIVITGCNKPSFFHEDKHSNLFEVELESGMLINTNNGSPITQVGSFSGVNKTCKVFQGGNVAHLHRLFSIESSSQVLYVGDHIYGDILRSKKALGWRTMLVVPELEREIELLLELKNTCKELQSLRSENDRIDNKLHHLKWRLKYDIDDDNDNEKRKSSSHHDALQAQREKARLNHQLAHLAYHQKFHKIWGQLMKTGYQNSRFAHQVERFACLYTSQVTNLGLYSPDKYFRPHEDFMAHEWQTLAVQEKLY 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1815085 1819236 + Bma018658.2 Bma04g00209 80578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00209 627 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 136 496 IPR008380 -
Bma04g00209 627 PANTHER CYTOSOLIC PURINE 5-NUCLEOTIDASE 124 619 - -
Bma04g00209 627 SUPERFAMILY HAD-like 134 618 IPR036412 -
Bma04g00209 627 CDD HAD_cN-II 137 592 - -
Bma04g00209 627 Pfam 5' nucleotidase family 137 617 IPR008380 -
Bma04g00209 627 Coils Coil 480 517 - -
Bma04g00209 627 Gene3D - 293 507 IPR023214 -
Bma04g00209 627 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 124 619 IPR008380 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00209 - - - jre:108982271 786.563
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g00209 Bma05g00120 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00209 Bma-Chr4:1815085 Bma05g00981 Bma-Chr5:48298498 3.15E-59 dispersed
Bma04g00209 Bma-Chr4:1815085 Bma05g00120 Bma-Chr5:3867725 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g945 . Blo12g00908 . Bda03g00260 . Bpe04g00213 Bma04g00209 . . . . . . Car12g00446 . . Cpe07g00424 . . . . . . . Cla08g01488 Cam08g1978 Cec08g1552 Cco08g1689 Clacu08g1668 . Cre08g1451 . . Cone17ag1342 Cone20ag0139 . . . Cme03g01956 . Blo18g00815 Bda08g01284 Bda01g01493 Bpe02g01689 Bpe05g00090 . Bma05g00120 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01395 Csa02g02053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00209 Bma_Chr04 FPKM 25.704344 28.262835 12.046056 11.408896 19.30073 16.915829 18.443659 12.467851 11.895514 12.648074