Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00212 ATGCCACTGAAAAGCGTAGTTCGTGAAATTAGAGATAGCATTGGAAACTTGAGAAGAAAAGGGGAAGAAGGAAGGACATTACGTCGTCCAGGAAAATCTCATATTGCACCAGAACAGCCGCCATGTTCACCTTCTTCTTCTTCATCAATTCCAGAGAGCCGATGGGCGAGTCTGCCCATCGAATTGTTTCTGGACATAATCCAAAGAGTAGAATCAAGCGAGACCTCCTGGCCTGGCAGGAGAGATGTTGTTGCCTGTGCTTCAGTTTGTAAATCATGGAGGGAGATTGCTAAAGGAGTTGTTAAAACCCCAGAGCAGTCTGGGTTGCTTACCTTTCCCATCTCCCTCAAACAGCCGGGACCAAGGGAGACTCCGATCCAGTGCTTTATAAAGAGGGAGAGTTCAACTTCAACCTATCTACTCTATCTCGGTCTCAGTCCTGCCCTGTCTGGCAACATGAGCAAGTTGTTACTAGCTGGAAGGAAGGTTAGACGGGCAACCCATACTGAATTTGTGATATCCTTAGTCGCCGATGATTTTTCTCGAGCAAGCAATACTTACATTGGAAAGCTAAGATCCAATTTCATGGGAACCAAGTTTTCAATCTATGACAGTCAGCCACCACAGGATCCAATTCTGCAAACAACTTGCAGGCCACATCGAAGAATCCATTTAAAGCAGGTTTCTCCAAGAGTACCCATTGGAAACTATATAATTTCCTCCATACATTATGAGCTTAATGTCCTGCGAACCCGAGGTCCGAGGAGAATGCAGTGCACAATGAACTCAATACCATTTTCATCCGTTCTAGAAGGTGGCACAGCTCCTACTCCAACCGAATTCACAAATTGTCTCGATGAAAAACAAGATCTTCCATTGTCACTACCAAAGAAAAAGAAGCATCAAGTTGAGTTAAGCTCCGCTAGTCTATCTGAGCCTTTCCTCCCGATTCATTCTCCACTTGTTCTGAAGAATAAAGCTCCGAGATGGCATGAACAGCTCCAATGTTGGTGCCTGAATTTCAGAGGGCGTGTAACAGTCGCCTCTGTCAAGAATTTCCAGCTCGTGGCATCAGCTGATCTTCTCCATAATATCTCCGAGACTGAACAAGAGAGAGTGATTCTGCAATTTGGTAAAATTGGAAAAGATATATTCACCATGGATTACCGATACCCGCTGTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACTAAACCCGCCTGCGAATGA 1242 45.09 MPLKSVVREIRDSIGNLRRKGEEGRTLRRPGKSHIAPEQPPCSPSSSSSIPESRWASLPIELFLDIIQRVESSETSWPGRRDVVACASVCKSWREIAKGVVKTPEQSGLLTFPISLKQPGPRETPIQCFIKRESSTSTYLLYLGLSPALSGNMSKLLLAGRKVRRATHTEFVISLVADDFSRASNTYIGKLRSNFMGTKFSIYDSQPPQDPILQTTCRPHRRIHLKQVSPRVPIGNYIISSIHYELNVLRTRGPRRMQCTMNSIPFSSVLEGGTAPTPTEFTNCLDEKQDLPLSLPKKKKHQVELSSASLSEPFLPIHSPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASADLLHNISETEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1832725 1834256 - Bma018661.1 Bma04g00212 80581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00212 413 MobiDBLite consensus disorder prediction 17 51 - -
Bma04g00212 413 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Bma04g00212 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Bma04g00212 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Bma04g00212 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Bma04g00212 413 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Bma04g00212 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Bma04g00212 413 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Bma04g00212 413 Pfam F-box domain 55 101 IPR001810 GO:0005515
Bma04g00212 413 Gene3D - 49 100 - -
Bma04g00212 413 Gene3D Tubby Protein; Chain A 112 413 IPR025659 -
Bma04g00212 413 SUPERFAMILY F-box domain 40 97 IPR036047 GO:0005515
Bma04g00212 413 MobiDBLite consensus disorder prediction 17 32 - -
Bma04g00212 413 Pfam Tub family 116 408 IPR000007 -
Bma04g00212 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Bma04g00212 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Bma04g00212 413 SUPERFAMILY Tubby C-terminal domain-like 104 413 IPR025659 -
Bma04g00212 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 413 - -
Bma04g00212 413 PANTHER TUBBY-RELATED 1 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00212 Bma-Chr4:1832725 Bma05g00585 Bma-Chr5:34169253 8.90E-152 dispersed
Bma01g02327 Bma-Chr1:80765164 Bma04g00212 Bma-Chr4:1832725 6.51E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57121 PF01167 Tub 1.50E-104 CL0395 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00212 K19600 - zju:107420271 627.091