Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00217 ATGAATAAAGGAAATGGGGAGACTAGCTATGCTAAAAACTCCACTGTTCAGAGCAAAATCATTACAATAGAAAATCCAGTGATAGTGGAAGCCATTGAAGGACTGTTGAGCAGATCTTTGCCGGAGATCATGGGGATAGCCGACTTAGGCTGCTCGTCTGGACCAAACACGTTAAACGCAGTGTCGGCGATAATGGACGTCGTGCATGAAAAATACACAGGTCGTGGGCGTTCACTGCCGGAGCTTAACGTGTTTCTCAATGATCTATATGGTAACGATTTCAATAATCTTTTCCAATTGTTACCAACTTTCCTCCGTAAAATTAAGACAGAAAAAGGGGGCGAGTTTGCCAGAAAATGTGCCATTTTCGGTGCTCCTGGTTCTTTCTATGTAAGACTATTTCCTAGCAAGAGCCTCCATTTTGTTCACTCCTCTACCAATCTCCATTGGCTATCTCAGGTTCCGCCATGTTTGGACGAAGAAGCAAAAGAAACGATGAACAAGGGAGCGATTTACATATCAAAGAAGAGTCCACCATGTGTGCTGGAAGCTTACGCTGGGCAATTTCATGTAGATTTCTCGGCGCTACTAAAATCACGTTCAGAAGAAATAGTCGAGGGAGGAAGAATGGTGTTGTCGTTCATGGGGAGGAAATCGAGGAACCCCACAGACGATATCTGCCTCCATTTTGAGATCTTAACGCAAGCCTTAATGAGTATGGTTTCAGAGGGACTAATCGATGAAGAAAAGGTTGACTGTTTCAACATTCCATACTATGCTCCATGCAAAGAAGAAGTAGAAGTGGAGATAAAGAGAGAGGGTTCATTCATTTTGGATCTTCAGGAAGCTTTTGAAATTGACTGGGACGGAGGAAGTATCGATGAAACGGTGAATGATTCTGCAACTCAATCGAGAGGACGACGAGTGGCAAAGATGATGCAAGCTGTGACCGAGTCCATGCTAGAGTCTCATTTTGGAGGAGAAATCATGGAAGAATTGTTCAAAAGATTTGAGGAAATCGTCCAAGATCATTTCGCAGAGACCAGTTTGAAAAAGATTAATTTGATTGTTTCTCTCATAAGGAAATAA 1089 42.61 MNKGNGETSYAKNSTVQSKIITIENPVIVEAIEGLLSRSLPEIMGIADLGCSSGPNTLNAVSAIMDVVHEKYTGRGRSLPELNVFLNDLYGNDFNNLFQLLPTFLRKIKTEKGGEFARKCAIFGAPGSFYVRLFPSKSLHFVHSSTNLHWLSQVPPCLDEEAKETMNKGAIYISKKSPPCVLEAYAGQFHVDFSALLKSRSEEIVEGGRMVLSFMGRKSRNPTDDICLHFEILTQALMSMVSEGLIDEEKVDCFNIPYYAPCKEEVEVEIKREGSFILDLQEAFEIDWDGGSIDETVNDSATQSRGRRVAKMMQAVTESMLESHFGGEIMEELFKRFEEIVQDHFAETSLKKINLIVSLIRK 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1857829 1859234 - Bma018667.1 Bma04g00217 80586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00217 362 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 1 360 IPR005299 GO:0008168
Bma04g00217 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 362 IPR029063 -
Bma04g00217 362 Gene3D Vaccinia Virus protein VP39 13 287 IPR029063 -
Bma04g00217 362 Gene3D - 1 347 IPR042086 -
Bma04g00217 362 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 1 360 - -
Bma04g00217 362 Pfam SAM dependent carboxyl methyltransferase 32 361 IPR005299 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00217 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] - zju:107403688 439.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00217 Bma-Chr4:1857829 Bma15g00701 Bma-Chr15:12669599 1.70E-171 dispersed
Bma03g00940 Bma-Chr3:9921252 Bma04g00217 Bma-Chr4:1857829 1.36E-112 transposed
Bma03g00952 Bma-Chr3:10137582 Bma04g00217 Bma-Chr4:1857829 1.49E-117 transposed
Bma08g00047 Bma-Chr8:668568 Bma04g00217 Bma-Chr4:1857829 1.88E-43 transposed
Bma14g00322 Bma-Chr14:4029568 Bma04g00217 Bma-Chr4:1857829 1.97E-61 transposed
Bma01g02336 Bma-Chr1:80956756 Bma04g00217 Bma-Chr4:1857829 0 wgd
Bma03g00557 Bma-Chr3:4591814 Bma04g00217 Bma-Chr4:1857829 8.23E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g981 . Blo12g00901 . Bda03g00269 . . Bma04g00217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00482 . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01919 Cam05g2056 Cec05g2068 Cco05g2120 Clacu05g2050 Cmu05g1927 Cre05g2050 . . . Cme04g00536
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00217 Bma_Chr04 FPKM 2.247549 2.179135 10.670686 10.456247 3.907517 4.650749 3.870125 42.347752 42.435089 45.553272