Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00219 ATGATTTCGCAGTTCTTCGTGCTCTCTCTTAGAGGCGACAACATTGTCTTCCGAGATTATCGCGGTGAAGTTCAGAAGGGCAGTGCTGAGATTTTTTTCCGTAAAGTGAAGTTTTGGAAGGAGGACGGAGAGGGAGACGCACCGCCTGTCTTTAATGTGGATGGCGTGAACTACTTTCATGTAAAGGTTGCTGGATTGTTATTTGTTGCTACAACAAGAGTGAATTTGTCGCCTTCTCTCGTGCTTGAACTTCTTCAAAGAATTGCACGAGTAATAAAGGATTACCTTGGAGTTCTAAATGAGGATTCACTGCGGAAAAATTTTGTCCTTGTGTACGAGTTACTGGATGAAGTTATAGATTTTGGTTACGTGCAAACAACATCGACCGAGGTTTTAAAGTCATTTGTTTTTAATGAGCCGATTGTGGTTGATTCTGGACGCTTGCCTGCCCTTGGCCCTGCTTCCATTTTTGTGCAAGGGACCAAAAGGATGCCAGGCACAGCTGTTACCAAATCTGTCATAGCAAATGAGCCTGGGGGTAAAAAGAGGGAGGAAATTTTTGTTGACATTATTGAGAAAATAAGTGTGACATTCAGCTCAAGTGGATATATCCTTACTTCTGAGATTGATGGCACCATTCAAATGAAGAGTTATCTTTCAGGGAACCCAGAAATACGCATTGCTCTAAACGAGGACCTAAGCATAGGAAGAAGTGGAAGATCTAATTATGATTATAATAGCTCATCTGGATCAGGGCCTGTTATTCTTGACGACTGTAATTTTCACGAATCAGTGCATCTTGATAATTTTGATATTGACAGAACATTGTCCTTGGTACCCCCAGATGGCGAATTTTCTGTTATGAATTACAGAATGACTCAGGAATTCAAGCCTCCATTTCGTGTTAATGTATTGATTGAGGAAGCTGGACCCTTAAAGGCTGAAGTAATAATAAAAGTACGAGCTGAATATGCCTCTACTGTGACGGCAAATACTGTACTGGTACAAATGCCCCTGCCAACATTCACTACCAGAGTCAGTTTCGAATTGGAACCTGGAGCAATTCTTGGCGGAGTAGAACATACCCTGCGTGCAAGGCTCACCTTCTCGCAAGAGTCCCACGGAAACATTGTGAAGGAAGCTGGACCTGTTAGCATGACATTCACGATCCCAATGTACAATGCTTCTAGACTTGTGGTAAAGTACTTGCAGATAGCACAGAAGTCGAGTAGCTACAATCCGTATAGATGGGTGAGATACGTAACCCAGGCAAATTCTTACGTTGCTCGGATATAA 1296 42.44 MISQFFVLSLRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKEDGEGDAPPVFNVDGVNYFHVKVAGLLFVATTRVNLSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSFVFNEPIVVDSGRLPALGPASIFVQGTKRMPGTAVTKSVIANEPGGKKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRIALNEDLSIGRSGRSNYDYNSSSGSGPVILDDCNFHESVHLDNFDIDRTLSLVPPDGEFSVMNYRMTQEFKPPFRVNVLIEEAGPLKAEVIIKVRAEYASTVTANTVLVQMPLPTFTTRVSFELEPGAILGGVEHTLRARLTFSQESHGNIVKEAGPVSMTFTIPMYNASRLVVKYLQIAQKSSSYNPYRWVRYVTQANSYVARI 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1877523 1881702 - Bma018670.1 Bma04g00219 80588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00219 431 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 182 430 IPR036168 -
Bma04g00219 431 CDD AP-4_Mu4_Cterm 178 431 - -
Bma04g00219 431 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bma04g00219 431 PRINTS Clathrin coat assembly protein signature 325 340 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bma04g00219 431 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bma04g00219 431 PRINTS Clathrin coat assembly protein signature 256 283 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bma04g00219 431 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Bma04g00219 431 CDD AP4_Mu_N 3 143 - -
Bma04g00219 431 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 355 431 - -
Bma04g00219 431 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 355 - -
Bma04g00219 431 PANTHER AP COMPLEX SUBUNIT MU 355 431 - -
Bma04g00219 431 PANTHER AP COMPLEX SUBUNIT MU 2 355 - -
Bma04g00219 431 Gene3D - 1 141 - -
Bma04g00219 431 Pfam Clathrin adaptor complex small chain 7 133 IPR022775 -
Bma04g00219 431 Gene3D Mu homology domain, subdomain B 298 430 - -
Bma04g00219 431 ProSiteProfiles Mu homology domain (MHD) profile. 183 430 IPR028565 -
Bma04g00219 431 Pfam Adaptor complexes medium subunit family 357 431 IPR028565 -
Bma04g00219 431 Pfam Adaptor complexes medium subunit family 181 353 IPR028565 -
Bma04g00219 431 PIRSF AP_complex_mu 1 431 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bma04g00219 431 Gene3D Mu homology domain, subdomain B 182 426 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00219 K12402 AP4M1; AP-4 complex subunit mu-1 - csv:101220143 762.681
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02339 Bma04g00219 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00621 Bma-Chr1:5617062 Bma04g00219 Bma-Chr4:1877523 2.90E-37 transposed
Bma05g00385 Bma-Chr5:12144560 Bma04g00219 Bma-Chr4:1877523 1.70E-65 transposed
Bma12g00201 Bma-Chr12:2672687 Bma04g00219 Bma-Chr4:1877523 3.92E-60 transposed
Bma14g01811 Bma-Chr14:38866276 Bma04g00219 Bma-Chr4:1877523 7.29E-30 transposed
Bma15g00212 Bma-Chr15:2116467 Bma04g00219 Bma-Chr4:1877523 1.67E-75 transposed
Bma01g02339 Bma-Chr1:81005111 Bma04g00219 Bma-Chr4:1877523 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g994 . . Bda01g00516 Bda03g00270 Bpe02g00373 Bpe04g00224 Bma04g00219 Bma01g02339 . . Cma01g01932 Cma09g00135 Car01g01508 . . Cpe06g00094 . . . . . . . . . . . . . . . . . Cone17ag1358 Cone20ag0122 Lsi04g01700 Csa03g04241 Chy04g00475 . . . . . . . . . . Cmo01g01995 Cmo09g00131 . . . Car09g00121 . Cpe02g00105 . . . . . . . Cla05g01911 Cam05g2048 Cec05g2059 Cco05g2113 Clacu05g2043 Cmu05g1920 Cre05g2043 . . . Cme04g00520
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004347 2 1 2 2 2 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 2 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00219 Bma_Chr04 FPKM 15.691916 16.934174 13.946163 14.699135 2.732674 1.889312 2.327801 3.11751 3.527113 2.804621