Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00221 ATGAGCGCGTGCTATGGCGGTTTTCTTACTCCTTCTTGTCTACTCCTAATTCGTAAATCCCATTATTCATCGACTCTTTCAAGCTCTAATCCTTTTCTCTACTCTTTCACTTCGAGAAAAGAACCGAGTAGTTTTTCAAGAATCTTTTCCGGTGCGCTCCAGCAAGGTCCTGTTGTGGTCACTTCCGAAGATGTTTCCTTGAAGAATCAAGATATTGGTTCCGGGGAAGATTTAGGGGGCGGGGAAGATGTTCTTAGAGTCGTCGATGGTGCAGGGGCCGTCGAGTCGAATGAAAAGGCGGGAAGTTTGACAAATAAGCTGGAAAAGAAGGGAGAAGATGTGGATAATTCCGATAATAGGTTCAAGCTGCGAAATGGAAAAGAAGTCATTGAAGAGAAGGCCTACCTTGTGGGCGTTGAACGTAAAGGGGACATTGAGAATTCTTTTGGCATAGAGGAATCACTCAAGGAACTGGAACAACTAGCTGACACAGCTGGGCTTATGGTTGTTGGTTCCACATACCAGAAACTAGCTTCTCCAAACCCCAGGACTTACATAGGCTCTGGAAAAGTGGCAGAAATCAAGAGTGCAATTCGTGCACTGGATGTTGAAACTGTAATATTTGATGATGAGCTTTCAGCTGGGCAATTGCGAAATTTAGAAAAGACATTTGGTGGAGATGTTGCATTAGCACAAATGGAATACCAGTTGCCTCGATTAACAAAATTGTGGACTCATCTTGAACGTCAAGCAGGAGGTAGGGTGAAGGGTATGGGTGAGAAACAGATTGAAGTGGATAAACGAATCTTACGGACACAAATTGGAACTCTCAAAAAGGAATTAGAATTGGTTAGAAAGCATCGACAACAATATCGAAACAGACGTGTTTCTGTACCTGTCCCAGTAGTATCATTGGTGGGATATACAAATGCTGGCAAGAGTACACTTCTGAATCATTTGACTGGAGCTAATGTCCTGGCCGAGGATCAACTGTTTGCCACCCTTGACCCAACTACAAGAAGGGTTCAGATGAAGAATGGAAAAGAGTTTCTCCTAACTGATACTGTTGGCTTCATCCAAAAATTACCTACTACTCTGATCGCTGCTTTTAGAGCAACATTAGAAGAAATTTCAGAGTCATCACTTTTGGTGCACGTGGTAGACATCAGTCATCCATTGGCAGAGAAACAGATAGAAGCTGTTGAAAAAGTTCTTTCCGAATTAGATGTGTCATCAATTCCTAAGTTGGTGGTCTGGAACAAGATTGATAAAGTTAGTAATCCTGAACAAATCAGGTTGGAAGCAAAGAAGAGAGGAGATGTTGTTTGCATATCGGCTGTTAATAACATTGGTTTAGACGAATTTTGTGATGCAGTGCAGGAAAAACTAAAGGACTTGATGGTGTGGGTGGAAGCTTTGATTCCATTTGACAAAGGGGAGCTTCTTAGCACTGTCCATCAAGTTGGAATGGTAGAGAGAACTGAATACACAGAAAATGGTACGTTGGTGAGGGCGCATGTTCCACTTAGGTTTGCAAGGCTACTCACACCAATGAGGCAACTTTGTGTATCTTGA 1575 42.54 MSACYGGFLTPSCLLLIRKSHYSSTLSSSNPFLYSFTSRKEPSSFSRIFSGALQQGPVVVTSEDVSLKNQDIGSGEDLGGGEDVLRVVDGAGAVESNEKAGSLTNKLEKKGEDVDNSDNRFKLRNGKEVIEEKAYLVGVERKGDIENSFGIEESLKELEQLADTAGLMVVGSTYQKLASPNPRTYIGSGKVAEIKSAIRALDVETVIFDDELSAGQLRNLEKTFGGDVALAQMEYQLPRLTKLWTHLERQAGGRVKGMGEKQIEVDKRILRTQIGTLKKELELVRKHRQQYRNRRVSVPVPVVSLVGYTNAGKSTLLNHLTGANVLAEDQLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLIAAFRATLEEISESSLLVHVVDISHPLAEKQIEAVEKVLSELDVSSIPKLVVWNKIDKVSNPEQIRLEAKKRGDVVCISAVNNIGLDEFCDAVQEKLKDLMVWVEALIPFDKGELLSTVHQVGMVERTEYTENGTLVRAHVPLRFARLLTPMRQLCVS 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1885866 1893484 - Bma018672.1 Bma04g00221 80590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00221 524 Coils Coil 274 294 - -
Bma04g00221 524 PANTHER GTP-BINDING PROTEIN 6-RELATED 113 226 - -
Bma04g00221 524 TIGRFAM GTP_HflX: GTP-binding protein HflX 228 463 IPR016496 GO:0005525
Bma04g00221 524 Gene3D - 145 227 IPR042108 -
Bma04g00221 524 PANTHER GTP-BINDING PROTEIN 6-RELATED 228 511 - -
Bma04g00221 524 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 301 467 IPR030394 GO:0005525
Bma04g00221 524 Pfam GTP-binding GTPase N-terminal 152 228 IPR025121 -
Bma04g00221 524 PRINTS GTP1/OBG GTP-binding protein family signature 370 388 IPR006073 GO:0005525
Bma04g00221 524 PRINTS GTP1/OBG GTP-binding protein family signature 303 323 IPR006073 GO:0005525
Bma04g00221 524 Pfam HflX C-terminal domain 433 502 IPR045498 -
Bma04g00221 524 PANTHER GTP-BINDING PROTEIN HFLX 113 226 IPR016496 GO:0005525
Bma04g00221 524 Hamap GTPase HflX [hflX]. 155 492 IPR016496 GO:0005525
Bma04g00221 524 Pfam 50S ribosome-binding GTPase 303 421 IPR006073 GO:0005525
Bma04g00221 524 Gene3D - 228 286 - -
Bma04g00221 524 TIGRFAM small_GTP: small GTP-binding protein domain 302 459 IPR005225 GO:0005525
Bma04g00221 524 Pfam GTP-binding GTPase Middle Region 228 295 IPR032305 -
Bma04g00221 524 CDD HflX 260 463 IPR030394 GO:0005525
Bma04g00221 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 473 IPR027417 -
Bma04g00221 524 Gene3D - 300 467 IPR027417 -
Bma04g00221 524 PANTHER GTP-BINDING PROTEIN HFLX 228 511 IPR016496 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00221 K03665 hflX; GTPase - zju:107420493 743.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00221 Bma-Chr4:1885866 Bma06g00327 Bma-Chr6:6429595 7.73E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1004 . . . Bda03g00271 . Bpe04g00226 Bma04g00221 . . . . Cma09g00132 . . . Cpe06g00092 . . . . . . . . . . . . . . . . . Cone17ag1363 Cone20ag0118 Lsi04g01703 Csa03g04243 Chy04g00472 . . . . . . . . . . Cmo01g01996 Cmo09g00129 . . . Car09g00118 . . . . . . . . . Cla05g01909 Cam05g2046 Cec05g2055 Cco05g2110 Clacu05g2039 Cmu05g1918 Cre05g2040 . . . Cme04g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011128 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00221 Bma_Chr04 FPKM 0.904348 0.0 0.69917 0.0 0.0 0.0 0.0 0.0 0.387534 0.297628