Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00222 ATGGAGACATATTTTCCAACCTCGAACAATCAAAGAGATGGAGTAGCTACTCCGTATACAGTGGACCCAAAAATTGATTCTTATTCAGAAATACCTCTCTGTTCTAATCGTATCGTGATGGGCCTGAATCAAGGCACTGTTCATGAATTCTACTCAGCTGCCTCAATAAGGATGTCTCAATCTCCTTCCAACCGTGTAGAAGCTATGGAGGACAGATGCGAGATGGCGTTTATTCCAGAATTTGGAGATCCATTAGGCAGACAGAATATTCAGTGTGGGGGGTTATCACTTAGCCTTGGCTCGAAGACACCTCTTTCTGCTGGAAATCAAAGTGCTATGGAAATGGAGTGTTTTCCAAATTCTTCTAGCTTGGCCACCCTTGGTAAAATGAACTCCAATGTCTATGATCATCTTGACGGTTCGGTTTTGGCTAGCACTGGCTTGGACTCCAAATATGTCAAGGCGGCTCAACAATTGCTCGATGAAGTTGTTAATGTTAGAGCAGCTTTGAATGAGTTAATATCTAATAAAAATAAAAGCTTTCTTTACAGCTCTAATGATAACATTGGCAGATCCAATGGTGGCTCTTTAGATGTGTCTTGTCATGAGCTCTCGCCTGAAGAGCGACAAGACTTGAAGAACAAAAGTGCTAAGCTTTTGGCCATGGTTGAAGAGGTGGATGAAAGATATAGGCAATATTATGAACAAATGCAAATTCTGGCTTCATCTTTCGACACAATATCTGGTTGGGGGGCTGCAGAATTATATACAGCACTAGCCCATCAAACAATCTCACGCCATTTTCGCCGCTTACGAGATGGAATTAGCGATCAGATTCTGGTAATGAGGAGAAGGTTGGGAGAGGAAGATTGTTCATCAGGTAACCAAAAAGGATTTCCTCGCTTACGGAATGTTGACCAGAAGCTCAGACAAGACAGGGCTCTTCAGCAACTTGGTCTTACCCGACATTCTTTGAGATCTCAAAGAGGGCTTCCTGAGAGCTCTGTCTCTATCCTTCGCGCTTGGCTGTTCGAACACTTCCTTCATCCATATCCAAAAGATTCTGAGAAGCTTATGTTAGCAAAGCAAACGGGATTGACACGACATCAGGTTGCCAACTGGTTCATAAATGCACGTGTGCGCCTCTGGAAACCCATGGTGGAGGAGATGTACAAAGAAGAGTTTGGCAATCCAAAGACGGGCTTCAACTTTTCACCGGAAAACACTTCCAGAGCTCCTGAGGACAGGGAAGAAGATTTGCAGAACGGCAGAATATCATCAAATGCTGACGGCGAGCAAATTCAGGAGCCAAAATCAAACGAAAATGATGAAAATGCAGAGAATATTGCCAGTACTACTCTTTGTCCGCGTGAAATTATTTTGCCAAGCCAAGTCTCAAGTGCGTTGAAGCTGAGGCATTGCGAAAGTAGCGCAGTCTCAAAACCGGACAGTGCTCATAATGCTGAAGATTCTCCTATGGGTAACTGCAGGTTAGGAAGCCCGCATCTACTACATGATCTTGTTGGCCTTTAG 1533 43.84 METYFPTSNNQRDGVATPYTVDPKIDSYSEIPLCSNRIVMGLNQGTVHEFYSAASIRMSQSPSNRVEAMEDRCEMAFIPEFGDPLGRQNIQCGGLSLSLGSKTPLSAGNQSAMEMECFPNSSSLATLGKMNSNVYDHLDGSVLASTGLDSKYVKAAQQLLDEVVNVRAALNELISNKNKSFLYSSNDNIGRSNGGSLDVSCHELSPEERQDLKNKSAKLLAMVEEVDERYRQYYEQMQILASSFDTISGWGAAELYTALAHQTISRHFRRLRDGISDQILVMRRRLGEEDCSSGNQKGFPRLRNVDQKLRQDRALQQLGLTRHSLRSQRGLPESSVSILRAWLFEHFLHPYPKDSEKLMLAKQTGLTRHQVANWFINARVRLWKPMVEEMYKEEFGNPKTGFNFSPENTSRAPEDREEDLQNGRISSNADGEQIQEPKSNENDENAENIASTTLCPREIILPSQVSSALKLRHCESSAVSKPDSAHNAEDSPMGNCRLGSPHLLHDLVGL 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1894730 1896960 - Bma018673.1 Bma04g00222 80591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00222 510 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 114 449 - -
Bma04g00222 510 ProSiteProfiles 'Homeobox' domain profile. 322 385 IPR001356 GO:0003677
Bma04g00222 510 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 449 - -
Bma04g00222 510 Pfam Associated with HOX 149 276 IPR006563 -
Bma04g00222 510 Pfam Homeobox KN domain 342 381 IPR008422 GO:0003677|GO:0006355
Bma04g00222 510 SMART HOX_1 325 389 IPR001356 GO:0003677
Bma04g00222 510 SMART prehox3 141 277 IPR006563 -
Bma04g00222 510 Gene3D - 321 398 - -
Bma04g00222 510 Coils Coil 156 176 - -
Bma04g00222 510 CDD homeodomain 326 386 IPR001356 GO:0003677
Bma04g00222 510 Coils Coil 209 229 - -
Bma04g00222 510 MobiDBLite consensus disorder prediction 396 447 - -
Bma04g00222 510 SUPERFAMILY Homeodomain-like 329 393 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00222 Bma05g00135 CCT
Bma01g00745 Bma04g00222 CCT
Bma04g00222 Bma05g00135 ECH
Bma01g00745 Bma04g00222 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00222 Bma-Chr4:1894730 Bma04g00527 Bma-Chr4:4641565 6.80E-84 dispersed
Bma01g02340 Bma-Chr1:81010313 Bma04g00222 Bma-Chr4:1894730 0 wgd
Bma01g00745 Bma-Chr1:6871474 Bma04g00222 Bma-Chr4:1894730 2.42E-72 wgd
Bma04g00222 Bma-Chr4:1894730 Bma05g00135 Bma-Chr5:4158704 3.20E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57122 PF07526 POX 1.10E-41 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00222 - - csv:101222692 397.897