Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00224 ATGGCAGGTTTCTTCTATCTAGGTGGAAGAGAAGGCCCACCAAGCAAACAAGACGAAGATCAAGCTGAAAGGGAGCAGAACCTGTTTTTGTACAGAAACGAGGAGATCTACAACAAAGGTTTCGAGATATGGCAGCAGTACAGTCATCAGCAACAACAAAACCAAAACTTGAACAATCACCTGTCGTTTGGAGTGGGTCCTAGCCACCAAAGAAACTTCCTCAATATCTCCGATGAGCCGTTTAGATCGGGATTAACGGCGATTAGACAAGGAGGGTTTGGAGGAGGAATGAATTGTCAAGACTGTGGAAATCAAGCTAAAAAAGATTGCTCCCATTTGAGGTGTAGAACTTGCTGCAAGAGTCGAGGGTTTCAGTGTGATACCCACGTTAAGAGCACGTGGGTTCCTGCTGCCAAACGCCGGGAGAGACAGCTCCAGCTCTCCGGTTTGAATACTCATGAAGAAGATCAGCAAATTTCGAAAAGGCAGAGGGACAATCAAGGACCCTCAACTACCCTTGCTTGGTTAGAGATGGCACAATTTCCAGCGGAGGTGAATGCTGCAGCAGTATTTCGGTGTGTGAAAGTGAGCGCTATAGATGATGTGGATGATCAGTTTGCTTATCAGACCGCAGTGAACATCGGCGGACATATTTTCAAGGGAATTCTGTATGATCAAGGACCGGAAGGAATCTATGCCGCCGGAGGAGACAGTTCCCCTGGCCAGGGCGGAGAGGGAATCCAGCAACTTAATCTCATAACAGGAATGACTGGAAATACTTCCGCAGCTACCACTTCTAACCCATCTGCTTCATTGGTTCATGCTTCATTATATCCTCAGCTCAACTCTTTTATGGCTGGTACGCAATTCTTCCAACCTTCAAGGTCTTAA 891 46.69 MAGFFYLGGREGPPSKQDEDQAEREQNLFLYRNEEIYNKGFEIWQQYSHQQQQNQNLNNHLSFGVGPSHQRNFLNISDEPFRSGLTAIRQGGFGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCDTHVKSTWVPAAKRRERQLQLSGLNTHEEDQQISKRQRDNQGPSTTLAWLEMAQFPAEVNAAAVFRCVKVSAIDDVDDQFAYQTAVNIGGHIFKGILYDQGPEGIYAAGGDSSPGQGGEGIQQLNLITGMTGNTSAATTSNPSASLVHASLYPQLNSFMAGTQFFQPSRS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1914050 1915110 - Bma018676.1 Bma04g00224 80593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00224 296 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 180 228 IPR006511 -
Bma04g00224 296 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 98 140 IPR006510 -
Bma04g00224 296 MobiDBLite consensus disorder prediction 1 23 - -
Bma04g00224 296 Pfam Domain of unknown function (DUF702) 96 229 - -
Bma04g00224 296 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 293 - -
Bma04g00224 296 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 293 IPR007818 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00741 Bma04g00224 CCT
Bma04g00224 Bma05g00149 CCT
Bma01g00741 Bma04g00224 ECH
Bma04g00224 Bma05g00149 ECH
Bma01g02345 Bma04g00224 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00224 Bma-Chr4:1914050 Bma15g00973 Bma-Chr15:37616023 3.28E-84 dispersed
Bma01g02345 Bma-Chr1:81040150 Bma04g00224 Bma-Chr4:1914050 6.69E-166 wgd
Bma01g00741 Bma-Chr1:6793248 Bma04g00224 Bma-Chr4:1914050 6.87E-114 wgd
Bma04g00224 Bma-Chr4:1914050 Bma05g00149 Bma-Chr5:4476375 5.66E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57124 PF05142 DUF702 1.20E-61 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00224 - - jre:108991308 377.867