Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00225 ATGGCGAGGGGTAAGATTCAGATCAAGAAGATAGAGAATCTGACCAACAGGCAGGTCACCTACTCTAAGAGAAGAAAAGGGTTGATCAAGAAGGCGGAGGAGCTCACTGTTCTCTGCGATGCTAAGGTTTCCCTCATCATGTTTTCTAGCACTGGGAAACTCGATGGATATCTCAGCCCGACTACCACGACCAAGGAGTTATTCGATCATTACCAGAGGGAATCAAAGACTGATCTTTGGAGCTCGCAATACGAGAAAATGCAGGAAACTCTGACCAAGCTGAAAGAGGTTAATAAGAATCTCCGAACGCAGATAAGCAGGCAAAGGGTCGGTGAATGTCTCAACGATCTCAACTTTGAAGAACTTCTTTGTCTTGAACAAGATATGGAAGATGCTGTCAAGGTTATTTGGGAGCGCAAGGTTAGCCTTAGATCTACCAGTTCTTCTCCTTCATCATTTTTTAGCTTTAGGTCTTTCTCTATCACAATTCACATTCTAAATTTAGTCATTTTGAGTCTTTTGTTTGATCAATATCTGTTAAGATACTCGCAGAAGGACATGTAA 564 42.02 MARGKIQIKKIENLTNRQVTYSKRRKGLIKKAEELTVLCDAKVSLIMFSSTGKLDGYLSPTTTTKELFDHYQRESKTDLWSSQYEKMQETLTKLKEVNKNLRTQISRQRVGECLNDLNFEELLCLEQDMEDAVKVIWERKVSLRSTSSSPSSFFSFRSFSITIHILNLVILSLLFDQYLLRYSQKDM 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1918926 1919777 + Bma018677.2 Bma04g00225 80594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00225 187 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Bma04g00225 187 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma04g00225 187 Pfam K-box region 81 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma04g00225 187 ProSiteProfiles K-box domain profile. 84 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma04g00225 187 Coils Coil 84 104 - -
Bma04g00225 187 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma04g00225 187 PANTHER APETALA3 1 141 - -
Bma04g00225 187 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bma04g00225 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Bma04g00225 187 Gene3D - 14 110 IPR036879 GO:0003677|GO:0046983
Bma04g00225 187 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma04g00225 187 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 141 - -
Bma04g00225 187 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma04g00225 187 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma04g00225 187 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02346 Bma04g00225 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02352 Bma-Chr1:81152783 Bma04g00225 Bma-Chr4:1918926 6.17E-23 dispersed
Bma04g00225 Bma-Chr4:1918926 Bma09g00098 Bma-Chr9:2633901 3.35E-56 dispersed
Bma01g02346 Bma-Chr1:81048997 Bma04g00225 Bma-Chr4:1918926 1.38E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57125 PF01486 K-box 1.10E-10 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00225 K09264 - csv:101218008 207.223