Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00226 ATGGGGAGGAAGAAGAAATTCATCGACAAGAAAAAATCGGCAACCTTCAAATTATTCGCTCGCGATTCGTCCGATACCAATCATGATCTTACCCCCGGAAGCGATCGGGTATTCATCCGCGTTGATGAAAACCCGTTCTCAGTTGAAACAATGGAGGATGAAACCGGAGAATTCCGCTTTGTTGGCAATGCCAATTCGGTTTTTGCCGACGCACCTGATGACGACGAAGGCGGCGAGGAAGATTGTAGAGTTTTTGGAAATTCTCAGGATATGCATGGTAGGGCGCCGCCTTTGGCCAATGATATAAGAAAACAAAATTTGGAGCTGGGATTTCCGGATGATGGTTACAATTATTTGATGCATTTGCGAGAAATCAAGAATACTGGTGGTGTTGGACTGTTCTATCATAATTCTAAGGCTAGGCTTGACGAGCTGCAGCACGACGTGAAGGCATACGATGCATCTAGAGTGCATGTTTCTCAATTGAACGGTGATCCTAATGATGAATGCTTCTACAATACTTCTTCAAAAACTATTGGCATTAAGGTTCAGAGAGCAGTTGATCCAGAAATAGCTGCCTTGCTTGATGAGGACGGTGATTTGTCGAGGTTTGACTCTGATGTGGAAGACTTGGAAGAAGACTTCGTTGTCCAGGCAAACCTGCTGAGTGAAGAGGAGGATGGGGGCAAAGAGAAGGGGTTTAAATTAATTGGCGTATCTGATCAAGCAAAAAAGGAAGTTAGTGGCTTATGTGATGCTGAAAATGGAGACAGTAGTGGTGTTGAAAAGCCAAGGGGTTGCCGGCCTTTGGATGAAGAGTTTGATTTTCTTTTGTGCGAGGAGTATGGAACCAACGAGAATGATCATTCTAACTATGATGAGTGTGATGCTGAAGATGATTTTCCAGCTGAAAAACTCAAAACTGCTTTGGGTGATCATGCAAAGGATGACTTAGACTGTGGTGAAATATATAGGACTCCTGCAGATGTGTTGAATGACAAAGGAAATTCCAGAACTGAAGAGGTTGAGTTTACTAGTGACATTATGCGCCGTTGTGTGGAATATGCAGAAGGGTATGAAAAAGAAGATCAAAATGAAGATGAGATTGTATTTGAGGAAAGTAGTGATGAATGTGAAGCGTGGGACTGTGATACAATTGTCTCCACATATTCCAATCTTGATAACCATCCGGGTAAAATTGAAGTTCCAGGTATAATTAGAAAGAAGAAGCTTGCAGAAACAGTTTCTGAAGCTTTGCATGCCAACAATAATACAATCACTCTCAGAGGAAAAGAGAAACTGCCAGTTGAATTTTTACCTCGCAGTAAAAAAACTACTATAGAGAAAGAGAAAGCTGTTGGGGGCTTGAGAACCGAGTTTCATACTAGAAAGCATCATGGTCAGGAGTCAAAGGAGGAAAAGAAAGAAAGAAAGACAGCTGTGAAGGAAGAACGGCGTGAAGCACGGCGTGCGAAAAAAGAAACGAAAGAGCTTTACAAGGGAGAGGCACAGCGTGCCCAAAAAGCAGCTGCTACATCTGGTCCTTCTTCTCTACGACTTCTGTAA 1566 42.72 MGRKKKFIDKKKSATFKLFARDSSDTNHDLTPGSDRVFIRVDENPFSVETMEDETGEFRFVGNANSVFADAPDDDEGGEEDCRVFGNSQDMHGRAPPLANDIRKQNLELGFPDDGYNYLMHLREIKNTGGVGLFYHNSKARLDELQHDVKAYDASRVHVSQLNGDPNDECFYNTSSKTIGIKVQRAVDPEIAALLDEDGDLSRFDSDVEDLEEDFVVQANLLSEEEDGGKEKGFKLIGVSDQAKKEVSGLCDAENGDSSGVEKPRGCRPLDEEFDFLLCEEYGTNENDHSNYDECDAEDDFPAEKLKTALGDHAKDDLDCGEIYRTPADVLNDKGNSRTEEVEFTSDIMRRCVEYAEGYEKEDQNEDEIVFEESSDECEAWDCDTIVSTYSNLDNHPGKIEVPGIIRKKKLAETVSEALHANNNTITLRGKEKLPVEFLPRSKKTTIEKEKAVGGLRTEFHTRKHHGQESKEEKKERKTAVKEERREARRAKKETKELYKGEAQRAQKAAATSGPSSLRLL 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1921507 1923828 + Bma018678.1 Bma04g00226 80595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00226 521 MobiDBLite consensus disorder prediction 450 503 - -
Bma04g00226 521 Coils Coil 471 498 - -
Bma04g00226 521 MobiDBLite consensus disorder prediction 450 521 - -
Bma04g00226 521 PANTHER LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED 1 520 IPR007307 GO:0042274
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00226 K14798 LTV1; protein LTV1 - vvi:100247237 504.597
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1044 . Blo12g00897 . . . Bpe04g00230 Bma04g00226 . . . Cma01g01947 . Car01g01521 . . . . . . . . . . . . . . . . . . . . Cone17ag1380 Cone20ag0103 Lsi04g01717 . . . . . . . . . . . . . . . . . . . Cpe02g00092 . . . . . . . Cla05g01899 Cam05g2035 Cec05g2043 Cco05g2099 Clacu05g2027 Cmu05g1907 Cre05g2029 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004778 0 1 1 1 1 1 1 1 1 1 1 1 1 4 2 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00226 Bma_Chr04 FPKM 13.166728 14.647274 17.30562 15.867593 10.432954 10.045973 12.002224 11.164866 10.13665 11.04568