Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00227 ATGGCTTATGAAGGGGATGGTGATTGGGAGATCTTGAGAGATGAGTCTGGCTTTCTTGAAAACCATCGTAACATGGAAAATGATCATGGTTTTAGGGGAAGAAGTGATTCTGGTCTTAATAGCGTTAAGGATGTTGGAACTGGTGGGGCAGCTGCAATATCTGTGGGACTGAAAGCTCATGCAGTTGGTCTCATTGAAAAAATTAAATTTAAGGAGGTCTTAAAACGCAAGGGCGGGGTTCAAGAGTATCTGGAATGCAGGAACCTAATCTTAGACCTCTGGTTTAAAGATGTTACTCGTATTCTGCACCTTGATGATTGTGGGATCACAGATAGTATCTCAACAGATGGACACTCACGTGCTTCCCTTGTTAGAGAGGTCTATTCGTTTCTCAATCAAAGCGGTTATATTAATTTTGGTATTGCTTCAGAGAAGGATACATCAGAACCAAATCATAATTATAAAGTTCTCAAAGAAAGAAAGAACCGACATGTTACTGATTCTTTAACTGCTGACATGGAGGATGGAATTTCATTTATTATCGGCCACGTTCAAAGTTCTGAGGCTTCTACAGAGGTCAAGAATGGTGTTAAATTTGATGTGGAAGAACAGTCAGAAGCTACCAGAGGAAGAGACTTGACTTCTGCAGTCAAGTCAGAACTTCTAAACGGGGATGAGCTTGAAGAAGATAATGCTTGTCTAGAAGACAACAGTGATATTATAAAAGAATCCAGTACATTAATTAGTGAGAATGTGTCAAGAAGTGATCTATCTTGTGACATAATAGATTGTAAGTCTGACATAATAGATGGCAAGTCTTTCCCTAGCTTGATTCCTGATGTGACAAATGTCTTTCCCAGTATTCATTCTTCCTCTGGAAGCCACAAAGGAGGTAATCATTATTATCAGCCTAATGCAGAAGTTGGAAAGAGAATCATCATCATAGGAGCTGGTCCTGCTGGATTAACTGCTGCGCGGCATTTGAAACGTCAGGGGTTTATCGTCACAATACTTGAGGCCAGAAGTAGAATAGGTGGTCGTGTTTACACTGATCGCAGTACTTTTTCCGTCCCTGTTGATCTTGGTGCAAGCATTATTACAGGTGTTGAGGCTGATGTTGCGACTGAAAGAAGACCTGATCCGTCTTCATTGATTTGTGCTCAGCTGGGTCTGGAGTTGACTGTGCTAAAGAGTGACTGCCCCCTCTATGACATTGTAACATGTCAAAAAGTTCCAGCTGATGTGGATAAAGCATTGGAAGCTGAATACAACAGTCTTCTTGATGACATGGTATTACTTGTTGCACAAAAGGGAGAACGTTCTATGAAAATGTCTCTTGAGGAAGGTTTAGAATATGCTCTTCAGCGGCGCCGTATGGCACAATTAGGCAGGGAGATTGAAGAAAAGATGCTGAAAAATTCTACAGAGCTTTTATCTAGCAGTAAAAATGTTCCCGAGACTAAGTGTTTTAAGGAAGAGATTTTGACTCCTCTTGAGAGGAGGGTGATGGACTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCTTTGCTCAAGGAAGTTTCTCTTCCAAACTGGAATCAAGATGATGTTTATGGGGGTTTTGGAGGAGCTCATTGTATGGTCAAAGGGGGTTATAGCACTGTTATTGAGTCACTTGGAGAAGGACTTTGCATCCATCTGAATCATTTAGTAACAGATATTTCTTATGATTTGCAGATTGCTTCCCCATGTGATGATCCTACTGGGGAAGTTAAAGTTTTCACCTCCAATGGCAGCGTGTTTCTTGGAGATGCTGTCTTGGTCTCAGTTCCTCTTGGGTGCTTGAAAGCAGAAACCATAAAGTTTTCTCCACCATTGCCCCAATGGAAGCATTCTTCCATTCAACGCCTTGGTTTTGGAGTTCTTAATAAAGTTGTTTTGGAATTTCCTGAAGTTTTTTGGGATGACTCTGTTGATTACTTTGGAGCAACTTCTGAGGAAACAAACTGGAGAGGTCAGTGCTTTATGTTCTGGAATGTTAGGAAAACTGTTGGTGCTCCTGTTCTGATAGCTTTAGTTGTTGGTAAGGCGGCTGTAGATGGGCAAAATCTAAGTTCTTCTGATCATATAAACCATGCATTAATGGTTCTTCGTAAACTTTTTGGAGAAGCTTTGGTGCCTGATCCAGTTGCATCTACAGTAACTGAGTGGGGCAAGGATCCTTTTAGCTACGGTGCTTATTCATATGTAGCAGTTGGAGCATCTGGGGAGGATTATGATATTTTGGCCAGGCCTATTGGAAACTGTTTATTTTTTGCTGGTGAAGCTACTTGCAAGGAGCATCCTGATACTGTTGGTGGTGCAATGATGAGTGGTCTTCGAGAGGCTGTACGCATTATCAATGTATTGAATACAGGATATGATTGGATTGCAGAAGTTGAGGCAATGGAGGCTGCTCAAAGACAATCTGATGGTGAAAAGGATGAATACAAGGACATATTAAGGAGACTTGACGCAGTTGAGCTTTCTAATGACCTGTATCATAAATCTCTTGGCACTGACACAATTATGACGAGGGACAATTTACTAGAGAATATGTTTTTTAATGCTAAAACCACGGCAGGACGGTTGTGTCTGGCAAAGGAGTTACTGAATCTTTCTGTTGAAACATTGAAGTCATTTGCAGGGACCAAAGAAGGGCTTACTGTGCTCAATTCTTGGATACTGGATTCAATGGGGAAAGATGGGACCCAACTTTTGAGGCACTGTGTCCGACTTCTCGTGGTCGTTTCAACTGATCTTCTTGCTGTGCGTTTGTCTGGCATTGGGAAAACTGTCAAAGAAAAGGTGTGTGTACATACAAGTCGGGACATTCGTGCCATTGCAAGTCAGTTGGTTAGTGTCTGGCTTGAAGTTTTTCGTAAAGAAAAAGCTTCAAATGGTGGAATGAAATTGAGGCCAGCAATGGCTATTGAATCTTCAAAACGAAAATATCTGAAAGATTCTTCTCGGAAGCCCCCTTTGCATTCCAACTCTGGTGGCGAGGAAGGTAAAGGTGTGTTACAGACATCTTCTACTGCTGGAAGTCATTTGCCTATCAGTGTAGGATTGAGTAAATCTTATTGCAAACCATTGAAGCAAGACTTGCAATGGAAATCAGATATCAGCTCATCAAGGTCTAGAGGATCATTGAGTGACGATGCTGCTATTTCTGAAGAAGAACAGGCTGCATTTGCTGCTGCTGAAGCAGCCCGTGCAGCACTTGCAGCTGCAGAGGCACATGCATTTTCAGGTGCCAAGTGCAGTACAACATTGCAGCTTCCAAAGATACCCTCATTTCATAAATTTGCTAGACGAGAGCAATATGGTCAGGGAGGTGAATGTGATATTCGTATGAGGTGCTCTGGCAGTATTTTGGGAAAACAAGATAGTATATCAGAAATAGACTCAAGAAATTGCAAAGTAAGAAACTGGTCTGTTGACTTTTCTGCTGCTTGTGTCAATCTTTATAGTTCAAGACTATCTGTGGATAATCTCTCTCTGAAAAGCCATTCCAATGAAATTATTGGTCAGTTAAACTGTAAGGAGCACTCAGCAGAAAGCATGGCTGTGGATAGTAGCCTTTATACAAAAGCGTGGGTTGATACGTCTGGTAGTGTGGGGATCAAGGACTATCATGATATTGAGAGATGGCAATCGCAAGCAGCAGCAGCCAGTAATAATTTCTTCTGGCCACATAGCCATATAAAGGACGAGGAGGATTCAAATGCCACTTTGAAGGAAGCAACTTGGAATAATAAAGTAGTGAATCAAAGCTCAGTTTCACAAGTTACAATGACTAAGGAGTATGTAAAAAAAGATTATTCCCGAGGAGCAGAGAAAATTAAACAGGCCGTTGTAGATTATGTTGCAACATTGTTAATGCCTCTTTATAAAACACGGAAAATTGACAAGGAGGGATACAAGTCAATAATGAAGAAAAGCGCCACTAAGGTTATGGAGCGGGCTACAGATGCAGAAAAAGCTATGGCTGTTCATGAATTTCTTGATTTGAAACGTAGGAACAAGGTAATGTCCATTTATTTGACATACATGAATGAACTATATTATATTTTTAGTGGCCTTGTGATTCTTAATTTTTTCAATTGTTATGGGAATAATATTTGCTTAAGGTTTCCCGTGTGTTTTCATAGGAATTGA 4182 40.91 MAYEGDGDWEILRDESGFLENHRNMENDHGFRGRSDSGLNSVKDVGTGGAAAISVGLKAHAVGLIEKIKFKEVLKRKGGVQEYLECRNLILDLWFKDVTRILHLDDCGITDSISTDGHSRASLVREVYSFLNQSGYINFGIASEKDTSEPNHNYKVLKERKNRHVTDSLTADMEDGISFIIGHVQSSEASTEVKNGVKFDVEEQSEATRGRDLTSAVKSELLNGDELEEDNACLEDNSDIIKESSTLISENVSRSDLSCDIIDCKSDIIDGKSFPSLIPDVTNVFPSIHSSSGSHKGGNHYYQPNAEVGKRIIIIGAGPAGLTAARHLKRQGFIVTILEARSRIGGRVYTDRSTFSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELTVLKSDCPLYDIVTCQKVPADVDKALEAEYNSLLDDMVLLVAQKGERSMKMSLEEGLEYALQRRRMAQLGREIEEKMLKNSTELLSSSKNVPETKCFKEEILTPLERRVMDWHFANLEYGCAALLKEVSLPNWNQDDVYGGFGGAHCMVKGGYSTVIESLGEGLCIHLNHLVTDISYDLQIASPCDDPTGEVKVFTSNGSVFLGDAVLVSVPLGCLKAETIKFSPPLPQWKHSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATSEETNWRGQCFMFWNVRKTVGAPVLIALVVGKAAVDGQNLSSSDHINHALMVLRKLFGEALVPDPVASTVTEWGKDPFSYGAYSYVAVGASGEDYDILARPIGNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIINVLNTGYDWIAEVEAMEAAQRQSDGEKDEYKDILRRLDAVELSNDLYHKSLGTDTIMTRDNLLENMFFNAKTTAGRLCLAKELLNLSVETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRHCVRLLVVVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRKEKASNGGMKLRPAMAIESSKRKYLKDSSRKPPLHSNSGGEEGKGVLQTSSTAGSHLPISVGLSKSYCKPLKQDLQWKSDISSSRSRGSLSDDAAISEEEQAAFAAAEAARAALAAAEAHAFSGAKCSTTLQLPKIPSFHKFARREQYGQGGECDIRMRCSGSILGKQDSISEIDSRNCKVRNWSVDFSAACVNLYSSRLSVDNLSLKSHSNEIIGQLNCKEHSAESMAVDSSLYTKAWVDTSGSVGIKDYHDIERWQSQAAAASNNFFWPHSHIKDEEDSNATLKEATWNNKVVNQSSVSQVTMTKEYVKKDYSRGAEKIKQAVVDYVATLLMPLYKTRKIDKEGYKSIMKKSATKVMERATDAEKAMAVHEFLDLKRRNKVMSIYLTYMNELYYIFSGLVILNFFNCYGNNICLRFPVCFHRN 1393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1933499 1939481 - Bma018679.1 Bma04g00227 80596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00227 1393 MobiDBLite consensus disorder prediction 990 1019 - -
Bma04g00227 1393 SUPERFAMILY FAD-linked reductases, C-terminal domain 632 743 - -
Bma04g00227 1393 Gene3D - 48 151 IPR036388 -
Bma04g00227 1393 Pfam SWIRM domain 60 139 IPR007526 GO:0005515
Bma04g00227 1393 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 17 1354 - -
Bma04g00227 1393 Gene3D - 312 792 IPR036188 -
Bma04g00227 1393 PANTHER FLAVIN MONOAMINE OXIDASE 17 1354 - -
Bma04g00227 1393 PRINTS Adrenodoxin reductase family signature 311 333 - -
Bma04g00227 1393 PRINTS Adrenodoxin reductase family signature 334 347 - -
Bma04g00227 1393 SUPERFAMILY Homeodomain-like 50 144 IPR009057 -
Bma04g00227 1393 Gene3D - 422 749 - -
Bma04g00227 1393 Pfam Flavin containing amine oxidoreductase 320 794 IPR002937 GO:0016491
Bma04g00227 1393 SUPERFAMILY FAD/NAD(P)-binding domain 309 797 IPR036188 -
Bma04g00227 1393 Coils Coil 810 830 - -
Bma04g00227 1393 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 891 975 IPR035441 -
Bma04g00227 1393 ProSiteProfiles SWIRM domain profile. 48 148 IPR007526 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00227 - - - zju:107420385 1741.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02351 Bma04g00227 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00227 Bma-Chr4:1933499 Bma05g00199 Bma-Chr5:5480573 3.95E-95 dispersed
Bma04g00227 Bma-Chr4:1933499 Bma04g00234 Bma-Chr4:2013905 0 proximal
Bma03g00068 Bma-Chr3:532897 Bma04g00227 Bma-Chr4:1933499 6.30E-97 transposed
Bma01g02351 Bma-Chr1:81097390 Bma04g00227 Bma-Chr4:1933499 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1051 . Blo12g00895 Bda01g00502 . . Bpe04g00232 Bma04g00227 Bma01g02351 . . . . . . . . . Bhi04g00234 . . . . . . Cla08g01440 Cam08g1920 Cec08g1496 . Clacu08g1610 . Cre08g1396 . . . . . . . Cme03g01899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57126 PF01593 Amino_oxidase 2.10E-104 CL0063 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00227 Bma_Chr04 FPKM 0.0 0.0 1.654929 2.829875 0.0 0.0 0.0 0.886758 0.0 1.139667