Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00234 ATGGCTTATGAAGGGGATGGTGATTGGGAGATCTTGAGAGATGAGTCTGGCTTTCTTGAAAACCATCGTAACATGGAAAATGATCATGGTTTTAGGGGAAGAAGCGATTCTGGTCTTAATAGCGTTAAGGATATTGGAACTGGTGGGGCAGCTGCAATATCTGTGGGACTGAAAGCTCATGCAGTTGGTCTCATTGAAAAAATTAAATTTAAGGAGGTCTTAAAACGCAAGGGCGGGGTTCAAGATTATCTGGAATGCAGGAACCTAATCTTAGACCTCTGGTTTAAAGATGTTACTCGTATTCTGCACCTTGATGATTGTGGGATCACAGATAGTATCTCAACAGATGGACACTCACGTGCTTCCCTTGTTAGAGAGGTCTATTCGTTTCTCAATCAAAGCGGTTATATTAATTTTGGTATTGCTTCAGAAAAGGATACATCAGAACGAAATCATAATTATAAAGTTCTCAAAGAAAGAAAGAACCGACATGTTACGGATTCTTTAACTGCTGACATGGAGGATGGAATTTCATTTATTATCGGCCACGTTCAAAGTTCTGAGGCTTCTACAGAGGTCAAGAATGGTGTTAAATTTGATGTGGAAGAACAGTCAGAAGCTACCAGAGGAAGAGACTTGACTTCTGCAGTCAAGTCAGAACTTCTAAACGGGGATGAGCTTGAAGAAGATAATGCTTGTCTAGAAGACAACAGTGATATTGTAAAAGAATCCAGTACATTAATTAGTGAGAATGTGTCAAGAAGTGATCTATCTTGTGACATAATAGATTGTAAGTCTGACATAATAGATGGCAAGTCTTTCCCTAGCTTGATTCCTGATATGACAAATGTCTTGCCCAGTATTCATTCTTCCTCTGGAAGCCACAAAGGAGGAAATCATTATTATCAGCCTAATGCAGAAGTTGGAAAGAGAATCATCATCATAGGAGCTGGTCCTGCTGGATTAACTGCTGCGCGGCATTTGAAACGTCAGGGGTTTATCGTCACAATACTTGAGGCCAGAAGTAGAATAGGTGGTCGTGTTTACACTGATCGCAGTACTTTTTCCGTCCCTGTTGATCTTGGTGCAAGCATTATTACAGGTGTTGAGGCTGATGTTGCGACTGAAAGAAGACCTGATCCGTCTTCATTGATTTGTGCTCAGCTGGGTCTGGAGTTGACTGTGCTAAAGAGTGACTGCCCCCTCTATGACATTGTAACATGTCAAAAAGTTCCAGCTGATGTGGATAAAGCATTGGAAGCTGAATACAACAGTCTTCTTGATGACATGGTATTACTTGTTGCACAAAAGGGAGAACGTTCTATGAAAATGTCTCTTGAGGAAGGTTTAGAATATGCTCTTCAGCGGCGCCGTATGGCACAATTAGGCAGGGAGATTGAAGAAAAGATGCTGAAAAATTCTACAGAGCTTTTTTCTAGCTGTAAAAATGTTCCCGAGACTAAGTGTTTTAAGGAAGAGATTTTGACTCCTCTTGAGAGGAGGGTGATGGACTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCTTTGCTCAAGGAAGTTTCTCTTCCAAACTGGAATCAAGATGATGTTTATGGGGGTTTTGGAGGAGCTCATTGTATGGTCAAAGGGGGTTATAGCACTGTTATTGAGTCACTTGGAGAAGGACTTTGCATCCATCTGAATCATTTAGTAACAGATATTTCTTATGATTTGCAGATTGCTTCCCCATGTGATGATCCTACTGGGGAAGTTAAAGTTTCCACCTCCAATGGCAGCGTGTTTCTTGGAGATGCTGTCTTGGTCACAGTTCCTCTTGGGTGCTTGAAAGCAGAAACCATAAAGTTTTCTCCACCATTGCCCCAATGGAAGCATTCTTCCATTCAACGCCTTGGTTTTGGAGTTCTTAATAAAGTTGTTTTGGAATTTCCTGAAGTTTTTTGGGATGACTCTGTTGATTACTTTGGAGCAACTTCTGAGGAAACAAACTGGAGAGGTCAGTGCTTTATGTTCTGGAATGTTAGGAAAACTGTTGGTGCTCCTGTTCTGATAGCTTTAGTTGTTGGTAAGGCGGCTGTAGATGGGCAAAATCTAAGTTCTTCTGATCATATAAACCATTCATTAATGGTTCTTCGTAAACTTTTTGGAGAAGCTTTGGTGCCTGGTCCAGTTGCATCTACAGTAACTGAGTGGGGCAAGGATCCTTTTAGCTACGGTGCTTATTCATATGTAGCAGTTGGAGCATCTGGGGAGGATTATGATATTTTGGCCAGGCCTATTGGAAACTGTTTATTTTTTGCTGGTGAAGCTACTTGCAAGGAGCATCCTGATACTGTTGGTGGTGCAATGATGAGTGGTCTTCGAGAGGCAGTACGCATTATCAATGTATTGAATACAGGATATGATTGGATTGCAGAAGTCGAGGCAATGGAGGCTGCTCAAAGACAATCTGATGGTGAAAAGGATGAATACAAGGACATATTAAGGAGACTTGACGCAGTTGAGCTTTCTGATGACCTGTACCATAAATCTCTTGGCACTGACACAATTATGACGAGGGAAAATTTACTGGAGAATATGTTTTTTAATGCTAAAACCACGGCAGGACGGTTGTGTCTGGCAAAGGAGTTACTGAATCTTTCTGTTGAAACATTGAAGTCATTTGCAGGGACCAAAGAAGGGCTTACTGTGCTCAATTCTTGGATACTGGATTCAATGGGGAAAGATGGGACCCAACTTTTGAGGCACTGTGTCCGACTTCTCGTGGTCGTTTCAACTGATCTTCTTGCTGTGCGTTTGTCTGGCATTGGGAAAACTGTCAAAGAAAAGGTGTGTGTACATACAAGCCGGGACATTCGTGCCATTGCAAGTCAGTTGGTTAGTGTCTGGCTTGAAGTTTTTCGTAAAGAAAAAGCTTCAAATGGTGGAATGAAATTGAGGCCAGCAATGGCTATTGAATCTTCAAAACGAAAATATCTGAAAGATTCTTCTCGGAAGCCCCCTTTGCATTTCAACTCTGGTGGCGAGGAAGGTAAAGGTGTGTTACAGACATCTTCTACTGCTGGAAGTCATTTGCCTATCAGTGTAGGATTGAGTAAATCTTATTGCAAACCATTGAAGCAAGACTTGCAATGCAAATCAGATATCAGCTCATCAAGGTCTAGAGGATCATTGAGTGACGATGCTGCTATTTCTGAAGAAGCACAGGCTGCATTTGCTGCTGCTGAAGCAGCCCGTTTAGCACTTGCAGCTGCAGAGGCACATGCATATTCAGGTGCCAAGTGCAATACAACATTGCAGCTTCCAAAGATACCCTCATTTCATAAATTTGCTAGACGAGAGCAATATGGTCAGGGAGGTGAATGTGATATTCGGATGAGGTGCTCTGGCAGTATTTTGGGAAAACAAGATAGTATATCAGAAATAGACTCAAGAAATTGCAAAGTAAGAAACTGGTCTGTTGACTTTTCTGCTGCTTGTGTCAATCTTTATAGTTCAAGACTATCTATGGATAATCTCTCTCTGAAAAGCCATTCCAATGAAATTATTGGTCAGTTAAACTGTAGGGAGCATTCAGCAGAAAGCATGGCTGTGGATAGTAGCATTTATACAAAAGCGTGGGTTGATACGTCGGGTAGTGTGGGGATCAAGGACTATCATGATATTGAGAGATGGCAATCGCAAGCAGCAGCAGCCAGTAATAATTTCTTCTGGCCACATAGCCATATAAAGGACGAGGAGGATTCAAATGCCACTTTGAAGGAAGCAACTTGGAATAATAAAGTAGTGAATCAAAGCTCAGTTTCACAAGTTACAATGACTAAGGAGTATGTAAAAAAAGATTATTCCCGAGGAGCAGAGAAAATTAAACAGGCCGTTGTAGATTATGTTGCAACATTGTTAATGCCTCTTTATAAAACACGGAAAATTGACAAGGAGGGATACAAGTCAATAATGAAGAAAAGCGCCACTAAGCTTTGGCGACACTATTTGGAAGGCAACCGTTTCATCATCCAAACAGACCACCAATCCTTGAAGTATCTACTGGATCAACGTATCACCACCCCACTCCAACAAAAGTGGCTCTCTAAACTGCTGGGCCTAGATTATCAGATTGCATATAGGCAAGGAAAACACAACGTTGTGGCCGATGCTCTCTCCCGTGCTCCTCTTCCTCCACCGTCGCCCATCCCAGAATGCCACAGTCTTTCCCTTAACACCCCACAGTGGATGAGGGAAGTCCTTTCCAGCTATGACGGAGATACTTGGGTAGTAGAGTTGCTTATCAAGCTTTCAGTCGATCCTTCCTCAGATCCTACATTCTCCATATCAAATGCAGAAGGGGGACACTCAAGTATACAGGCCACTCTTCACCGAGCCAAATCTCTGTTCTGGTGGCCTGGCCTTTCTGCTGATGTTCGCTCGTATGTCAGCAGTTGTGATACCTGCCAACGGTGCAAACACGAAAACATCCACTATCCAGGTCTGCTTCAACCATTGCCGATTCCTCAGCAACCCTGGACCCACATTGCTATGGACTTCATTGAAGGTCTTCCTAGCTCCCTTCATTCCAACTGCATCCTAGTCGTGGTGGATCGATTTACAAAATATGCCCATTTTCTGGCCCTTCACCATCCGTTCACCGCCGTTCAGGTTGCTAACCTCTTTTTGGATAATATTTTCAAGTTGCATGGTATTCCACTTTCTATGGTCTCCGACAGAGACCCGATATTTCTCTCAGCTTTCTGGCAGTCGGTTTTCTCCTCGCTGGGAGCAGCGCTGGATACTTCTACTGCTTATCACCCTAAGTCAGATGGTCAAACTGAGAGGCTGAATCAGTCTTTATACGGGCAGCCTCCTCCCCGTTTAGCGCTGGGCCCCTACTTACCATCATCCTCCGCCGCCGCCGATGGCTACCTCCGTGATCGACATGCAATGAACTCCCTGTTGAAAGAAAACATTTTGCAGGCACAGCAACGTATGAAGCTCTATGCGGATCGCAACCGCACTGAACGTAGTTTTCAACCGGCAGACTGGGTATATTTGAAGTTATAG 5055 43.07 MAYEGDGDWEILRDESGFLENHRNMENDHGFRGRSDSGLNSVKDIGTGGAAAISVGLKAHAVGLIEKIKFKEVLKRKGGVQDYLECRNLILDLWFKDVTRILHLDDCGITDSISTDGHSRASLVREVYSFLNQSGYINFGIASEKDTSERNHNYKVLKERKNRHVTDSLTADMEDGISFIIGHVQSSEASTEVKNGVKFDVEEQSEATRGRDLTSAVKSELLNGDELEEDNACLEDNSDIVKESSTLISENVSRSDLSCDIIDCKSDIIDGKSFPSLIPDMTNVLPSIHSSSGSHKGGNHYYQPNAEVGKRIIIIGAGPAGLTAARHLKRQGFIVTILEARSRIGGRVYTDRSTFSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELTVLKSDCPLYDIVTCQKVPADVDKALEAEYNSLLDDMVLLVAQKGERSMKMSLEEGLEYALQRRRMAQLGREIEEKMLKNSTELFSSCKNVPETKCFKEEILTPLERRVMDWHFANLEYGCAALLKEVSLPNWNQDDVYGGFGGAHCMVKGGYSTVIESLGEGLCIHLNHLVTDISYDLQIASPCDDPTGEVKVSTSNGSVFLGDAVLVTVPLGCLKAETIKFSPPLPQWKHSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATSEETNWRGQCFMFWNVRKTVGAPVLIALVVGKAAVDGQNLSSSDHINHSLMVLRKLFGEALVPGPVASTVTEWGKDPFSYGAYSYVAVGASGEDYDILARPIGNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIINVLNTGYDWIAEVEAMEAAQRQSDGEKDEYKDILRRLDAVELSDDLYHKSLGTDTIMTRENLLENMFFNAKTTAGRLCLAKELLNLSVETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRHCVRLLVVVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRKEKASNGGMKLRPAMAIESSKRKYLKDSSRKPPLHFNSGGEEGKGVLQTSSTAGSHLPISVGLSKSYCKPLKQDLQCKSDISSSRSRGSLSDDAAISEEAQAAFAAAEAARLALAAAEAHAYSGAKCNTTLQLPKIPSFHKFARREQYGQGGECDIRMRCSGSILGKQDSISEIDSRNCKVRNWSVDFSAACVNLYSSRLSMDNLSLKSHSNEIIGQLNCREHSAESMAVDSSIYTKAWVDTSGSVGIKDYHDIERWQSQAAAASNNFFWPHSHIKDEEDSNATLKEATWNNKVVNQSSVSQVTMTKEYVKKDYSRGAEKIKQAVVDYVATLLMPLYKTRKIDKEGYKSIMKKSATKLWRHYLEGNRFIIQTDHQSLKYLLDQRITTPLQQKWLSKLLGLDYQIAYRQGKHNVVADALSRAPLPPPSPIPECHSLSLNTPQWMREVLSSYDGDTWVVELLIKLSVDPSSDPTFSISNAEGGHSSIQATLHRAKSLFWWPGLSADVRSYVSSCDTCQRCKHENIHYPGLLQPLPIPQQPWTHIAMDFIEGLPSSLHSNCILVVVDRFTKYAHFLALHHPFTAVQVANLFLDNIFKLHGIPLSMVSDRDPIFLSAFWQSVFSSLGAALDTSTAYHPKSDGQTERLNQSLYGQPPPRLALGPYLPSSSAAADGYLRDRHAMNSLLKENILQAQQRMKLYADRNRTERSFQPADWVYLKL 1684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2013905 2028674 - Bma018686.1 Bma04g00234 80603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00234 1684 Pfam SWIRM domain 60 139 IPR007526 GO:0005515
Bma04g00234 1684 MobiDBLite consensus disorder prediction 990 1019 - -
Bma04g00234 1684 SUPERFAMILY FAD/NAD(P)-binding domain 309 797 IPR036188 -
Bma04g00234 1684 Gene3D - 312 792 IPR036188 -
Bma04g00234 1684 PANTHER FLAVIN MONOAMINE OXIDASE 17 1328 - -
Bma04g00234 1684 SUPERFAMILY FAD-linked reductases, C-terminal domain 632 743 - -
Bma04g00234 1684 ProSiteProfiles Integrase catalytic domain profile. 1502 1615 IPR001584 GO:0015074
Bma04g00234 1684 SUPERFAMILY DNA/RNA polymerases 1322 1375 IPR043502 -
Bma04g00234 1684 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 891 975 IPR035441 -
Bma04g00234 1684 Gene3D - 48 152 IPR036388 -
Bma04g00234 1684 SUPERFAMILY Ribonuclease H-like 1499 1616 IPR012337 -
Bma04g00234 1684 Gene3D - 1436 1486 - -
Bma04g00234 1684 Pfam RNase H-like domain found in reverse transcriptase 1323 1365 IPR041373 -
Bma04g00234 1684 Gene3D - 422 749 - -
Bma04g00234 1684 Pfam Integrase zinc binding domain 1448 1488 IPR041588 -
Bma04g00234 1684 PRINTS Adrenodoxin reductase family signature 334 347 - -
Bma04g00234 1684 PRINTS Adrenodoxin reductase family signature 311 333 - -
Bma04g00234 1684 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 17 1328 - -
Bma04g00234 1684 CDD RNase_HI_RT_Ty3 1310 1388 - -
Bma04g00234 1684 SUPERFAMILY Homeodomain-like 50 143 IPR009057 -
Bma04g00234 1684 Pfam Flavin containing amine oxidoreductase 320 794 IPR002937 GO:0016491
Bma04g00234 1684 Gene3D - 1497 1670 IPR036397 GO:0003676
Bma04g00234 1684 Coils Coil 810 830 - -
Bma04g00234 1684 ProSiteProfiles SWIRM domain profile. 48 148 IPR007526 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00234 - - - zju:107420385 1699.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02351 Bma-Chr1:81097390 Bma04g00234 Bma-Chr4:2013905 0 dispersed
Bma04g00234 Bma-Chr4:2013905 Bma05g00199 Bma-Chr5:5480573 3.23E-94 dispersed
Bma14g00017 Bma-Chr14:216488 Bma04g00234 Bma-Chr4:2013905 8.96E-12 dispersed
Bma14g00189 Bma-Chr14:2426906 Bma04g00234 Bma-Chr4:2013905 8.29E-52 dispersed
Bma04g00227 Bma-Chr4:1933499 Bma04g00234 Bma-Chr4:2013905 0 proximal
Bma02g00667 Bma-Chr2:18971931 Bma04g00234 Bma-Chr4:2013905 1.38E-15 transposed
Bma05g00797 Bma-Chr5:45172028 Bma04g00234 Bma-Chr4:2013905 1.98E-13 transposed
Bma11g00952 Bma-Chr11:42605102 Bma04g00234 Bma-Chr4:2013905 9.65E-08 transposed
Bma15g00242 Bma-Chr15:2432195 Bma04g00234 Bma-Chr4:2013905 1.78E-62 transposed
Bma03g00068 Bma-Chr3:532897 Bma04g00234 Bma-Chr4:2013905 4.20E-96 transposed
Bma04g00234 Bma-Chr4:2013905 Bma04g00286 Bma-Chr4:2294487 3.42E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1052 Blo01g01586 . . . Bpe02g00363 . Bma04g00234 . Cmo05g00295 Cmo12g00373 . . . Car12g00399 . . Cpe07g00378 Bhi04g00235 . . . Hepe10g0131 . . . . . . . . . Cone4ag1951 Cone7ag1863 . . . . . . . . . . . . . . . . . Cma12g00423 Cma05g00288 Car05g00239 . Cpe11g00239 . . . . . . . . . . . . . . . Lsi08g01341 Csa02g02114 Chy03g01402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57127 PF01593 Amino_oxidase 1.20E-103 CL0063 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00234 Bma_Chr04 FPKM 3.197904 2.253891 9.405981 10.583255 2.834869 3.02581 3.097047 11.81042 9.166927 12.484674