Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00237 ATGGGCTCGGTTTCTCTCAAAATCGGAGATGGAACTGCCAGATTCAAGAGAGCAAGTTACTGTTCTTCAGCTCTCAACATTGTTATGCTTCTCTCTGTTATCACTACCAATCTTTTCGCTCTCTATGCTTTCACCTACTCCCCAAAAGATCAACAAAATGTTTTACTTCACCATACCCAGAAGAACATCTCGCTGATTTCTGAACAGGTGTCTTTGATTCTCCGGGAAATTGATTCCTCCCAGAAAAAGCTTGCCCGGATGGAAAAAGAGCTTATTGGGTATGAAAGCATCGATCTTTCCAGATCCAACACTGCAAATGAACTCAAACTCTTTCTTCAACACCACCAACTCCCTCTGGGCAAAGATTCGAAAAGTGGAATCACTGAAATGGTGGCATCTGTCGGCCATTCCTGCGAAAAATCCATGCACCAGCTTTCTCAGTATATGTCTTACAAGGTTTCTGGACCTTGTCCTGATGATTGGAGCCTCGGGCAGAGGTTGATTCTGCGTGGATGTGAGCCTTTGCCGAGAAGAAGGTGTTTCGCCAAATCTGTACCAAAGGTGGGTTTCTCTCCTTTTCCTGCTTCTCTTTGGACCCCTGTCAGTAACAATAGCGTCACTTGGAGTGGTATTGGCTGTAAGAATTTTGAATGCTTAAATGATAGAAAATTAGGTAGAGATTGTGTTGGCTGCTTTGATTTGGCTAATGCTAATGAGAAACAGAAGTTTGTTAAAGCCAAAGGGAAGAATGATTTTCTTATAGATGATGTTTTGGCTTTGAGCAATGGTGGAATAAGAACAGGCTATGATATTGGAGGTGGGTCTGGAACATTTGCTGCAAGAATGGCAGAGAAGAATGTGACTGTCGTCACAAACACTTTGAATATCGATGCTCCATTCAGCGAATTCATAGCTGCAAGAGGGCTATTCCCCCTCTACTTGAGTTTAGATCATCGATTTCCTTTCTACGACAACGTCTTCGACTTGATTCGTGCATCAAGTACGTTAGATGTCGGGGGAAAGCCCGAGAAATTGGAGTTCCTAATGTTCGATATCGACAGAATTTTGAGGGCCGGGGGATTGTTTTGGTTGGACAACTACTATTGTACTGATGAGGAGAAGAAGAAGAGTTTAACACGATTAATCGAGCGCTTTGGGTATAAAAAGCTGAAATGGGTCGTCGGGGAGAAGGTCGATGGAACCAAATCTGTGGTCTATTTGTCTGCTGTGCTACAAAAGCCTGTAAGAGTGTGA 1254 43.3 MGSVSLKIGDGTARFKRASYCSSALNIVMLLSVITTNLFALYAFTYSPKDQQNVLLHHTQKNISLISEQVSLILREIDSSQKKLARMEKELIGYESIDLSRSNTANELKLFLQHHQLPLGKDSKSGITEMVASVGHSCEKSMHQLSQYMSYKVSGPCPDDWSLGQRLILRGCEPLPRRRCFAKSVPKVGFSPFPASLWTPVSNNSVTWSGIGCKNFECLNDRKLGRDCVGCFDLANANEKQKFVKAKGKNDFLIDDVLALSNGGIRTGYDIGGGSGTFAARMAEKNVTVVTNTLNIDAPFSEFIAARGLFPLYLSLDHRFPFYDNVFDLIRASSTLDVGGKPEKLEFLMFDIDRILRAGGLFWLDNYYCTDEEKKKSLTRLIERFGYKKLKWVVGEKVDGTKSVVYLSAVLQKPVRV 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2053058 2054311 + Bma018689.1 Bma04g00237 80606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00237 417 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 1 417 - -
Bma04g00237 417 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 260 364 IPR004159 GO:0008168
Bma04g00237 417 Coils Coil 70 97 - -
Bma04g00237 417 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 1 417 - -
Bma04g00237 417 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 253 390 IPR029063 -
Bma04g00237 417 Gene3D Vaccinia Virus protein VP39 245 406 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00237 - - - csv:101215265 707.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00586 Bma-Chr1:5329421 Bma04g00237 Bma-Chr4:2053058 1.12E-79 dispersed
Bma01g01494 Bma-Chr1:29442676 Bma04g00237 Bma-Chr4:2053058 8.80E-65 dispersed
Bma04g00237 Bma-Chr4:2053058 Bma09g00097 Bma-Chr9:2610934 3.40E-07 dispersed
Bma04g00237 Bma-Chr4:2053058 Bma15g00971 Bma-Chr15:37348904 2.02E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1077 . . . Bda03g00280 . Bpe04g00236 Bma04g00237 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1960 Cone7ag1873 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009763 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00237 Bma_Chr04 FPKM 19.078449 18.967308 83.847168 82.551987 270.851959 299.855194 260.279816 46.978489 48.97963 47.943241