Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00238 ATGGATTCTGTTGAAGAGAAGGTTAAGACTGGGGTCGTGGTTAATGCCACACAGACAAATCTGGTCGAGGAGATGAAGCTATTGAAAGAGATACATGATCAGACTGTTGCTCGAAAGGCCATAAGTTCAGAGTTATGGCATGCCTGCGCTGGCCCTCTCGTTTCTTTGCCTCAGATGGGGAACCTCGTTTATTACTTCCCTCAAGGGCATAGCGAGCAGGTAGCAGTTTCAACTAAAAGAATTGCAACGTCACAGATTCCAAACTATCCACATCTTTCATCTCAGCTGATGTGCCAAGTTCAAAATATTACTTTACACGCAGATAAAGATACGGATGAGATATATGCTCAAATGTGCCTCCAACCAGTGAACTCTGAAAAAGATGTTTTCCCAGTACCGGATTTTGGACTGCGGCCAGGCAAGCATCCAAGCGAGTTTTTCTGCAAAACTTTGACTGCCAGTGATACTAGCACTCATGGTGGCTTCTCTGTTCCTCGAAGGGCAGCCGAAAAACTTTTTCCTCCATTGGATTTCACGATGCAACCGCCAACTCAAGAACTTGTTGTACAAGATTTGCATGACAATACATGGACTTTTCGCCATATATACAGAGGCCAGCCAAAGAGACACCTTCTGACAACTGGGTGGAGTTTGTTTGTAGGTGCAAAAAGGCTTAGAGCAGGCGACTCAGTTCTATTTATTAGGGATGAGAAATCGCAATTGCTTGTTGGAGTGAGGCGAGCCAATCGTCAGCAAACGACATTACCATCATCTGTTCTGTCTGCTGATAGTATGCATATTGGTGTGCTAGCTGCTGCAGCTCATGCTGCTGCTAATCATTGCCTATTTACAATATTCTACAACCCAAGGGCATGCCCTTCCGAGTTTGTGATTCCTGTAGCTAAATATCGAAAATCTGTATATGGAACTCAACTTTCTGTTGGCATGAGGTTTGGGATGATGTTTGAAACAGAAGAATCAGGCAAGCGCAGATATATGGGTACATTAGTTGGTATTAGCGACTTAGATCCGTTGAGGTGGCCAGGTTCCAAGTGGCGAAATCTTCAGGTGGAATGGGATGAGCCTGGCTGTTGTGATAAACAAAATAGAGTGAGTTCATGGGAAATCGAAACTCCGGAAAGTCTCTTTATTTTTCCTTCTCTAACTTCGGGTTTGAAACGACCATTACACAATGGATTTTTGGGCGAAACCGATTGGGGTAGTTTGGTTAAAAGACCTCTTCTTCGAGTCCCTGAAAATGGACATAAAAATTTTCCGTATGCAGTTTCGAGTTTGTATTCTGAACAGCTGATGAAGATGCTTGTCAGGCCTCAACTTGTGAATCTTCCTAGATCTTCTTCTTTGTCCCAAGACTCAGTTTCCAAGGTCGACCAATTGTCAAATTGGAAGATCTTACAGCCTGTTAATAATCAAAAGACTAACCTCATCTCTTCGGAAAACATATCCTTGCAAAATCAAACTAATCCTTCTTCTTGCCCTGATCAATCTGACGTTCTAACTTCAATTTCATCATCAAACTCTAATTTACCTGTAAAACTTGGATCTCCTTCGAGTCTCGGGGGTCAAATACTGGCTGCAGGTAATGGTGAGTGCACAAAAGTCAATTCCGAGCTCACAACAGACCAGTTAAGCCAGTTAGCCTCGACCGGGGAGTGTAGAGAAGAAAAACTAAGTTCTGGCCATGAAAATCTGCAGAGCTATGTTAAAAATTTGCCATCTCTGAGCCAGGGTCAAACTCCATTGCCATTGCAGGCTAATGCTTGGCCTCTCCAGCCTCCGCTAGAACCATTGATGCACCATTTTCAACCAATTGACATACCTCAATATGACTTTTCTGGTCCAACTTCCTTGCTTCCTTCTTTAGATCCCAATGGATATGTACCTTCCTACCAACCTCATTCTGTAGTAATGAGACCTTCAGTGCCTTCATCTATGGCGGGATTGCCAGACCAGTTTGTACCATTTTCAGAATCATTCAACTATCCTTTACCTTTGGTGGGTCATGAATCTTGGGATAACCTCAGGTTCTTGTCCCATGCAAACCAAATGACTTATTCTCACATGAAGATCCGTCTAGTTTGA 2103 43.27 MDSVEEKVKTGVVVNATQTNLVEEMKLLKEIHDQTVARKAISSELWHACAGPLVSLPQMGNLVYYFPQGHSEQVAVSTKRIATSQIPNYPHLSSQLMCQVQNITLHADKDTDEIYAQMCLQPVNSEKDVFPVPDFGLRPGKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDFTMQPPTQELVVQDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANHCLFTIFYNPRACPSEFVIPVAKYRKSVYGTQLSVGMRFGMMFETEESGKRRYMGTLVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHNGFLGETDWGSLVKRPLLRVPENGHKNFPYAVSSLYSEQLMKMLVRPQLVNLPRSSSLSQDSVSKVDQLSNWKILQPVNNQKTNLISSENISLQNQTNPSSCPDQSDVLTSISSSNSNLPVKLGSPSSLGGQILAAGNGECTKVNSELTTDQLSQLASTGECREEKLSSGHENLQSYVKNLPSLSQGQTPLPLQANAWPLQPPLEPLMHHFQPIDIPQYDFSGPTSLLPSLDPNGYVPSYQPHSVVMRPSVPSSMAGLPDQFVPFSESFNYPLPLVGHESWDNLRFLSHANQMTYSHMKIRLV 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2055814 2059497 - Bma018690.2 Bma04g00238 80607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00238 700 SMART B3_2 147 249 IPR003340 GO:0003677
Bma04g00238 700 Pfam Auxin response factor 273 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bma04g00238 700 Gene3D - 311 383 - -
Bma04g00238 700 SUPERFAMILY DNA-binding pseudobarrel domain 135 276 IPR015300 -
Bma04g00238 700 CDD B3_DNA 146 247 IPR003340 GO:0003677
Bma04g00238 700 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Bma04g00238 700 PANTHER AUXIN RESPONSE FACTOR 5 27 643 - -
Bma04g00238 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 643 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma04g00238 700 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Bma04g00238 700 Gene3D - 145 248 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02358 Bma04g00238 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00238 Bma-Chr4:2055814 Bma07g00655 Bma-Chr7:10909727 1.49E-163 dispersed
Bma04g00914 Bma-Chr4:12549926 Bma04g00238 Bma-Chr4:2055814 2.47E-64 transposed
Bma01g02358 Bma-Chr1:81282895 Bma04g00238 Bma-Chr4:2055814 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57128 PF02362 B3 1.10E-21 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00238 K14486 - csv:101216825 938.332