Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00246 ATGCAAGAGAGAACTCTCTCTGCAACTATACTATCGCCGTTATCTTTTTTTCTTTGCCTGCTTTTAATGGCTGTCGCAGCTTTTTTACCTCTCCCCGATCAACATTTAAAGCCCAAAAACCACCATTCCAAAAGAAGATGCAAGCAGCAAAAGCCATCTTCTTCTTCTTCTTCTTCTTCTTCGTGGGACCAAATAAAGAACCTTCTCACCTGTAAACAGATCGAAGGAACCAAAGTTCATCACCCATCAAAGATCCCATCAGCCACGTCCAAAGTCGGGTACACATGTATCTCCATCTGTAGCTTTAAGGATGTCATTCATGGCAACACTAAGGTCGTACACAGAGCTGATAACTCGCCGGTGAGTAGCTCGGTGGGTCAGGAAGCCAGTTTACTCAATCGGAAAGGTACAAATGGACAGTCGACTCGGTCTGTCTCGAGATCCATAAACAGTTCAACTCGAGGAATGCAATTGAGAAAGCTTTCTGGCTGTTACGAGTGTCATGCCATTGTCGACGCAAGCAGATACCCTGTTGCGAGAACTACCATTTGTTCTTGTTCTAAGTGTGGTGAGGTCTTCCCGAAGATGGAAAGCTTGGAACTTCACCTAGCAGTTCGCCATGCCGTATCGGAGCTGGGTCCGGAAGATTCGGGTCGTAATATAGTGGAGATCATTTTCAAATCAAGCTGGCTCAAAAAGGATAGTACCGTATTCCAAATCGAACGGATATTAAAGGTCCAGAACACCCAGCGAACAATCCAACGTTTCGAAGACTGCCGAGACGCAGTAAAGACTCGTGCGCTCAACAGTAGCAGAAAAAACCCTAGGTGCGCTGCCGATGGAAACGAGCTACTGAGGTTCCATTGCACCAGTTTATCGTGCGCGCTAGGCGCACATGGATCGTCCAGCTTGTGCGGCTCCATTCCAGGCTGTGGAGTCTGCACTATCATACGCCACGGCTTTGAAGGAAAGAAGGAAGAGGGGGTGCGCACCACAGCTTGCAGCGGTAGGGCGCACGACCTGTGGAGCTGTACGGAAGGAAGGACTCGGAGGGCGATGCTGGTCTGTCGTGTCATCGCCGGAAGGGTGAGGCGCGTCGACGGAGATGCGGCGGAGCAGGAGGAGGCCGTGCCTCCTCCTGGGTCGTATGATTCTGTATCTGGACAAGCTGGCGTGTACTCCAATCTCGAGGAGTTGATCGTTTTCAATCCCAAGGCTATCCTTCCTTGTTTTGTAGTTATTTACGCTGCCCTGGAGTCCTAG 1263 49.88 MQERTLSATILSPLSFFLCLLLMAVAAFLPLPDQHLKPKNHHSKRRCKQQKPSSSSSSSSSWDQIKNLLTCKQIEGTKVHHPSKIPSATSKVGYTCISICSFKDVIHGNTKVVHRADNSPVSSSVGQEASLLNRKGTNGQSTRSVSRSINSSTRGMQLRKLSGCYECHAIVDASRYPVARTTICSCSKCGEVFPKMESLELHLAVRHAVSELGPEDSGRNIVEIIFKSSWLKKDSTVFQIERILKVQNTQRTIQRFEDCRDAVKTRALNSSRKNPRCAADGNELLRFHCTSLSCALGAHGSSSLCGSIPGCGVCTIIRHGFEGKKEEGVRTTACSGRAHDLWSCTEGRTRRAMLVCRVIAGRVRRVDGDAAEQEEAVPPPGSYDSVSGQAGVYSNLEELIVFNPKAILPCFVVIYAALES 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2103621 2105374 + Bma018698.1 Bma04g00246 80615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00246 420 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 45 419 - -
Bma04g00246 420 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 45 419 - -
Bma04g00246 420 ProSitePatterns Zinc finger C2H2 type domain signature. 184 207 IPR013087 -
Bma04g00246 420 SUPERFAMILY ADP-ribosylation 209 416 - -
Bma04g00246 420 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 212 IPR013087 -
Bma04g00246 420 MobiDBLite consensus disorder prediction 38 62 - -
Bma04g00246 420 Gene3D - 208 416 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00246 Bma05g00163 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00228 Bma-Chr2:2396807 Bma04g00246 Bma-Chr4:2103621 7.77E-86 dispersed
Bma02g00231 Bma-Chr2:2421948 Bma04g00246 Bma-Chr4:2103621 8.99E-93 dispersed
Bma04g00246 Bma-Chr4:2103621 Bma14g00541 Bma-Chr14:5889431 3.11E-63 dispersed
Bma14g00038 Bma-Chr14:500946 Bma04g00246 Bma-Chr4:2103621 8.08E-36 transposed
Bma04g00246 Bma-Chr4:2103621 Bma05g00163 Bma-Chr5:4707995 4.32E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57129 None None None None Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00246 - - zju:107435832 568.54