Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00250 ATGACACTTGAAGATTTCTTTACTTTGACTGAAATTAAAAATGGACTCACAGTCCTGTCAAGAGTTGAGGAGCTGGTTGCTGTTATGCAGAAGGAGAAAGATTTTGTTGTAAAGAACGCAGGAGATGCAACCAGGCAGTGGGCTGCTGTTGCAAGTACACTCTCTGCTACAGAGAATAAGAGTTGTCTTGATCTTTTTATCCAACTAGATGGACTTTGGTTCATTGATAGATGGCTTGAGGATGCACAAAAATTTAGCAATGATACAAATGACAGCTTTGTGGAAGAGTCGCTTAGTGTTCTACTAAGAGCACTTGGGAAGCTCCACATAAGCAGTGAGAAGTCAGTTTCTTCCGGGATCTTTATTACTGTTAAAAATCTTCTTGGCCATAACAGTGCTACGATTCAGGATAAGGCAAGAGATCTTTTTGATAGTTGGAAGCCGGAAACAGACAATAATGTTGTTCATGGTGTAGCAGAAAATGTTGGAGGATCTTATGGTGATAATACAGACCTTCTAGGTGAGGATGGCCAGCCGTCTGCTACAAATATTCCTCAGGAGAGAGAAGTGACTATCCCAGAAAACCAAAAATCAGAAGACGCCCTTGGTGAAACATTGCCATCAAGAAACTCAGATGCTCTTCAGTCAGAACAGGTTGGAGATTTAAATATTCAAACTCAGTTAAATGAGCTGGGAGATGATATTTCCGACCAGTCAGGGATAGACGACAAACCGCAAGCTAATCTGTCTTCAGCTGTTGAGTTAAATCCTGTTTTAGAAGATGGCTCTAGGAATGAGGAAAACTACACTGGTTCTGTAGAAGAAAATTCAACTACTGACATTCTTTGCTCACTGGTTCCACAGGAAACTGGTGCTGATGAAATCTTGAATAATTCGATGTCGAGTGATTTGCCTAAAGATGAAATCCAAACATGTAGGAGTGATAGGTCTTCCGACCACTCAGGTGTGACAGAGAAATTAGAGATTTTGCCCTCTAACATGCCAGAACCTGGAGCTATTTTATTAGGCGATGCCATTAGTCCTGAAGAGTCCTATAAAGAAATTTCTTTACAAGATGATTGTAGGGATGATCAGGCTGGTATATATCAAAATAGGAGTGGTCTTGATAGTGAGAGGACATTTGCATCAGATTTTAGGAGTGATATGAACAACAAGAAAGGTAATTATTCCAGTATGCTGGCGTTCAAAGTTGCAGGCCAAGATGGTGAGTATCATCCAAATGCTTTATATGAAGCGTCCGACTGTGGAGCTTTACTGAAGAAACATAACAACCTAGAGACAACTTTTTCCAGTAGGAAAGATATTAGTGCGATGGATGAACATGAGCGTAGTAATAGTGAAAGTGAGGACGATACTACAGATTCTGAATTTTCTGAACCAATATTAAATTCTAGGAGACCAAAAGTGATTGAAGAAAGGTCAGATATGGAACTTGATTATGGCATAGTTGATGCTTTAGAGGTTGCTAGAAAAGTTGCTCAAGAAGTGGAGAGGGAAATGGTTGGTTACAGAGGGCCATGTAGCTCATCTTCTGATAAAATCTCAGGTGGTGGAATCAGGAATCTAGAAAGTCCAGACTCCATTACGGGAAAGCACGACAAACAAACTTTAGTGCAACCAAAAGAAGATCAATCTGCGCAAAGTCATTCGACAGATGGATACTCTGAGGAGGAAGTACATTTACGCAATATTGACAACCTGGATACTGAGAAAGAAACTTTGTTCGACCTGGAGTCCTCCCAGGTGACTGAAGCATGCAATGAAGCAGAGGCAAACACCGAGAAAGGACTGTGTGACTTTGATCTGAATGAAGAAGTCTGTTCTGATGATGTGGATCATTTAGCAAATTCAATCTCTACTCCTATTTCTGTTGTGTCTGTTTCGAGGCCATCGGCAGTTCCTGGATTGCTACTAACTCCTTTGCAGTTTGAAGGTACCCTTGGATGGCGAGGTTCTGCAGCTACTAGTGCTTTCCGTCCGGCATCTCCTAGAAGAATGTCTGATGGTGATAAATCTCTCTTTTCTGTGGGAAACTCTGATACTAAGCGGAGGCAGGACATTCCTGCATTTGATTTGAATGTTGCTGAGACTGGAGATGAAGTGGGAAAACAGACAGTGGTTTCTGCTGATCTCCCTGCTGGGAAATGTTTAGAGGAAACTAGTTGTAGAAGAGAGGAGGGAATAAGGTTGGATTTAAACTGTGTTAGTGATGATGGTGATGTTTCGGTACTGGATCTGAGGCTGGAGGCACGGCTTTTTCATGACGAAAATGGACTCAATGCTTCTCCTGCATCCTCATCATCTTCTATGCAACCTTTATTGAAGAACATTGATTTGAATGACAGGCCATTTGTTCAAATTGATTCTTCAGAACCACATAGTCTCGTTAGGTCTTCAAATGTTAGTGGTTATACAGGACCTAAACCTGGTGCCTCTGTGATTTCCATAATGGGTACCAAGGTGGAGGTAGGAAGAAAAGATTTTGGTCTTGAAACACCATCTTATCCTAATGGCCGATCTGTTGAACATGCATCTGGTGGTAGCATGACGAGAACAGGTTTTGTATTGGGCGTGAATACTCCAATGTCTTACACTCAAGCTCCATTTTTTGAGTACAATGGCTTGACTGTAGGCCCGAATATACCTTTCACTTCTGCTATGTACGGACATGGGGGCACTATTCCTTGCATGGTGGACTCAAGAGGGGGTAGTGTTGTACCTCAAATTTTGGGTTCTACTTCAGCCATTCCACAACCCTCTTACTCTCAGCCACCATTCATCATGAGCATGAGTGACGGCCAATCCGGTCTAAATGGTGTGGGACCCTCGCACTCTAACCTTGATCTAAATACTGGATTCATGATTGATGGGGGGGTGGGTCGGGACTCCGGGGGTTCGAGGCAGTTTTTCCTTCCAGTTCATAATAGGACTGTCGAGGAGCAGTTCAGAGCTAATTCACGGCCCTCCAGTTCTGGGATTGGTGGGAAGAGGAAGGAACCTGATGGGGGATGGGAATCCTACCCATTTAGCTATAAACACCAACAGCCACCGTGGAAATAG 3081 42.71 MTLEDFFTLTEIKNGLTVLSRVEELVAVMQKEKDFVVKNAGDATRQWAAVASTLSATENKSCLDLFIQLDGLWFIDRWLEDAQKFSNDTNDSFVEESLSVLLRALGKLHISSEKSVSSGIFITVKNLLGHNSATIQDKARDLFDSWKPETDNNVVHGVAENVGGSYGDNTDLLGEDGQPSATNIPQEREVTIPENQKSEDALGETLPSRNSDALQSEQVGDLNIQTQLNELGDDISDQSGIDDKPQANLSSAVELNPVLEDGSRNEENYTGSVEENSTTDILCSLVPQETGADEILNNSMSSDLPKDEIQTCRSDRSSDHSGVTEKLEILPSNMPEPGAILLGDAISPEESYKEISLQDDCRDDQAGIYQNRSGLDSERTFASDFRSDMNNKKGNYSSMLAFKVAGQDGEYHPNALYEASDCGALLKKHNNLETTFSSRKDISAMDEHERSNSESEDDTTDSEFSEPILNSRRPKVIEERSDMELDYGIVDALEVARKVAQEVEREMVGYRGPCSSSSDKISGGGIRNLESPDSITGKHDKQTLVQPKEDQSAQSHSTDGYSEEEVHLRNIDNLDTEKETLFDLESSQVTEACNEAEANTEKGLCDFDLNEEVCSDDVDHLANSISTPISVVSVSRPSAVPGLLLTPLQFEGTLGWRGSAATSAFRPASPRRMSDGDKSLFSVGNSDTKRRQDIPAFDLNVAETGDEVGKQTVVSADLPAGKCLEETSCRREEGIRLDLNCVSDDGDVSVLDLRLEARLFHDENGLNASPASSSSSMQPLLKNIDLNDRPFVQIDSSEPHSLVRSSNVSGYTGPKPGASVISIMGTKVEVGRKDFGLETPSYPNGRSVEHASGGSMTRTGFVLGVNTPMSYTQAPFFEYNGLTVGPNIPFTSAMYGHGGTIPCMVDSRGGSVVPQILGSTSAIPQPSYSQPPFIMSMSDGQSGLNGVGPSHSNLDLNTGFMIDGGVGRDSGGSRQFFLPVHNRTVEEQFRANSRPSSSGIGGKRKEPDGGWESYPFSYKHQQPPWK 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2134193 2137273 - Bma018702.1 Bma04g00250 80619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00250 1026 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 62 153 IPR035441 -
Bma04g00250 1026 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 1026 - -
Bma04g00250 1026 MobiDBLite consensus disorder prediction 201 217 - -
Bma04g00250 1026 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 1026 - -
Bma04g00250 1026 MobiDBLite consensus disorder prediction 440 457 - -
Bma04g00250 1026 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Bma04g00250 1026 MobiDBLite consensus disorder prediction 987 1026 - -
Bma04g00250 1026 MobiDBLite consensus disorder prediction 175 191 - -
Bma04g00250 1026 MobiDBLite consensus disorder prediction 165 217 - -
Bma04g00250 1026 MobiDBLite consensus disorder prediction 437 473 - -
Bma04g00250 1026 Pfam TFIIS helical bundle-like domain 101 147 IPR017923 -
Bma04g00250 1026 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 152 IPR035441 -
Bma04g00250 1026 MobiDBLite consensus disorder prediction 510 565 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00250 - - - mcha:111006388 878.626
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02376 Bma04g00250 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01007 Bma-Chr1:10269303 Bma04g00250 Bma-Chr4:2134193 7.15E-12 dispersed
Bma04g00250 Bma-Chr4:2134193 Bma08g00176 Bma-Chr8:2167215 8.78E-14 dispersed
Bma01g02376 Bma-Chr1:81396643 Bma04g00250 Bma-Chr4:2134193 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1137 . Blo12g00881 . . . . Bma04g00250 Bma01g02376 . . Cma01g01979 Cma09g00097 Car01g01551 . . Cpe06g00060 . . . . . . . . . . . . . . . . . Cone17ag1414 Cone20ag0069 Lsi04g01755 Csa03g04289 Chy04g00407 . . . . . . . . . Sed01g2483 Cmo01g02038 Cmo09g00094 . . . Car09g00085 . Cpe02g00065 Bhi09g02076 Tan01g5035 Cmetu04g3193 . Hepe01g1606 Mch11g0106 . Cla05g01862 Cam05g1991 Cec05g2003 Cco05g2061 Clacu05g1983 Cmu05g1864 Cre05g1988 . . . Cme04g00459
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008019 0 1 1 2 0 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57130 PF08711 Med26 2.70E-05 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00250 Bma_Chr04 FPKM 18.25955 19.196617 18.21487 20.230988 17.666975 19.244246 19.587439 30.865555 28.842106 29.379745