Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00251 ATGATTTTCGACAATCTTACCGGTCCGCTTCCCGTGGAAATGGCCAAGCTCGTTTCTCTCAAGAACCTTAACATCTCGAACAATGTGTTTACCGGTAACTTTCCCGGAGAAATGATTCTAAATATGAAAGAACTCGAGGCGCTCGACGTTTATAACAACAATTTCACCGGAACACTTCCATTGGAGATCGTCAAGCTCAAGAAGCTACACCATCTTAACCTCGGCGGAAACTACTTCACCGGAGAGATTCCGGAAGCTTACTCGGAGATTCAGAGCCTGGAGATATTGGGCTTGAGTGGAAATTCACTCACCGGAAAGATCCCGCCTAGTTTATCTCGGCTGAAGAATCTGAAAAAACTTTATGCCGGTTACTACAACGCCTACGAAGGGGGAATACCTCCGGAGTTTGGAGCGTTGAGTGAACTCGAACTTCTTGACTTGGGTAACTGTAATCTCACTGGGGAAATTCCAACGAGCCTAAGCCTCTTAAAACATCTGCACTCGCTGTTTCTGCAAGTCAATCGACTCACCGGCCGTATTCCTTCTGAGTTTTCTGGGTTATTAAGCTTGAAATCGCTCGACCTTTCAGTTAACGAACTGACTGGAGAGATACCAGAAAGTTTTGCGGCGCTCCAGAATATTACGCTGATTAATCTGTTTAAGAACAAGCTTCACGGTCCAATTCCTTCATTTATCGGAGACCTTCCAAACCTCGAAGTGCTTCAAATTTGGGAGAATAACTTCACGCTTGAGCTCCCACGTAATCTTGGACGTAACGGGAAGCTTCTCCATCTCGACGTAGCCACAAATCACCTTACCGGAATCATTCCTCGGGACTTGTGCTTGGGCGGAAAATTGAAGACTTTGATTCTTTTGGAGAATTACTTCTTCGGACCAATCCCTGAAGAACTTGGCCGCTGCAAATCGCTGACTAAAATTAGAATTATGAAGAATTTCTTCAACGGTACGATTCCTGCCGGAATTTTTAACATGCCGGAACTGTTGATGATAGAGTTTAGTGATAACTATTTTTGTGGCGAACTCCCATTGCGAATATCAGGTGATTCTCTTGGACTTATCACATTGTCCAACAATAAAATTACTGGAAAAATTCCTCCGGCCATTGGAAATTTGAAGAACTTGCAGGGATTATCGCTGGAAATGAATGAATTCGAGGGAGAAATTCCTGAAGAATTGTTCGAATTGAAAATGCTTTTAAAAATCAACATCAGCTCCAATAATATTAGTGGTGAAATCCCAAACTCAATGTCTCGATGCACTTCTCTAACCTCATTCGATGTTAGCCACAACAAGATCGTTGGAGAAATTCCTCGAGGTATTGCTAATTTGAAAATTTTGAGCATATTTAATATTTCAGGCAACCAACTCGCCGGTGAAATACCAAGTGAAATCCGATCAATGTCAAGCCTCACAACTCTGGATCTTTCAGACAATAATTTCTTCGGCAATGTTCCCTCTGGTGGCCAATTTTCCGTCTTCAACGAAAGTTCTTTCACTGGGAATCCTGGCCTCTGTTTGTTCCGTAACAGTAGTTGTCTGTCTCTACCATACCATGCAAAAAACTCTGATCGGAGTCAGAAGACAATCAAATCCTCCAAAATCATCATAGTTCTTATTGCTACCATTGCCATCACTACTGTTCTGTTATTCTTACTAGTCACTGCTTATGCGATGAAGAAGATGTTACAGAAATCTGAAGCATGGAAGCTCACTGCTTTCCAACGACTGAATTTTAAGGTGGAAGACGTAGTGGAGTGCTTGAAAGAAGAGAATATCATTGGAAAAGGTGGTGCTGGAATAGTCTACCGAGGATCCATGCCCGATGGTCACGATGTGGCGATCAAACGGCTGGTTGGCCGAGGAATGGGAAGGAGCGACCATGGTTTCGCAGCGGAAATCCAGACTTTAGGCCGAATCAGGCACCGGAATATTGTCAGACTTTTAGGATATGTATCGAACAAGGAGAACAATCTGTTGCTTTACGAGTACATGAACAATGGAAGCTTGGAGGAGATGTTACATGGAGCAAAAGGCGGCCATTTACAGTGGGATTTGAGGTTCAAGATAGCCATGGATGCTGCTAAAGGTCTATGTTATCTTCACCATGATTGTACTCCTCTGATCATTCACAGGGACGTGAAATCGAACAACATTTTGCTCGATTCAAACCACGAAGCTCATGTTGCTGATTTTGGGCTCGCAAAATTCTTGCGAGAGGCTGGCGCCTCTGAATGCATGTCCTCCATTGCTGGCTCTTATGGCTACATTGCTCCAGAGTATGCTTACACGCTGAAGGTGGACGAGAAGAGCGACGTATACAGCTTCGGAGTGGTCCTGCTTGAGCTGGTGACCGGAAGAAGGCCGGTGGGGGAGTTCGGAGATGGAGTGGATATAGTGAGGTGGGTTAGAGAAACCACTATGGAGATGTCTCAGCCGTCTGATGCGGCTTCAGTTCTGTCAGTGGTGGATCCCAGGCTCGGTGGGTACCCACTGGCAAGTGTCATTCATCTGTTTAAGATAGCCATGATGTGCGTCGAGGATGAAAGTTCTTCAAGGCCTACCATGAGGGAGGTTGTACACATGCTCACTAACCCACCGCCACCGTCTCGTCCTCCCCCTTCCGCCGCTGCTCAGACCAAACTCATCATTTTTTAG 2676 45.03 MIFDNLTGPLPVEMAKLVSLKNLNISNNVFTGNFPGEMILNMKELEALDVYNNNFTGTLPLEIVKLKKLHHLNLGGNYFTGEIPEAYSEIQSLEILGLSGNSLTGKIPPSLSRLKNLKKLYAGYYNAYEGGIPPEFGALSELELLDLGNCNLTGEIPTSLSLLKHLHSLFLQVNRLTGRIPSEFSGLLSLKSLDLSVNELTGEIPESFAALQNITLINLFKNKLHGPIPSFIGDLPNLEVLQIWENNFTLELPRNLGRNGKLLHLDVATNHLTGIIPRDLCLGGKLKTLILLENYFFGPIPEELGRCKSLTKIRIMKNFFNGTIPAGIFNMPELLMIEFSDNYFCGELPLRISGDSLGLITLSNNKITGKIPPAIGNLKNLQGLSLEMNEFEGEIPEELFELKMLLKINISSNNISGEIPNSMSRCTSLTSFDVSHNKIVGEIPRGIANLKILSIFNISGNQLAGEIPSEIRSMSSLTTLDLSDNNFFGNVPSGGQFSVFNESSFTGNPGLCLFRNSSCLSLPYHAKNSDRSQKTIKSSKIIIVLIATIAITTVLLFLLVTAYAMKKMLQKSEAWKLTAFQRLNFKVEDVVECLKEENIIGKGGAGIVYRGSMPDGHDVAIKRLVGRGMGRSDHGFAAEIQTLGRIRHRNIVRLLGYVSNKENNLLLYEYMNNGSLEEMLHGAKGGHLQWDLRFKIAMDAAKGLCYLHHDCTPLIIHRDVKSNNILLDSNHEAHVADFGLAKFLREAGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRRPVGEFGDGVDIVRWVRETTMEMSQPSDAASVLSVVDPRLGGYPLASVIHLFKIAMMCVEDESSSRPTMREVVHMLTNPPPPSRPPPSAAAQTKLIIF 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2139326 2142262 - Bma018703.1 Bma04g00251 80620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00251 891 Gene3D Ribonuclease Inhibitor 246 521 IPR032675 -
Bma04g00251 891 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515
Bma04g00251 891 Pfam Leucine Rich Repeat 142 161 IPR001611 GO:0005515
Bma04g00251 891 PANTHER UNNAMED PRODUCT 3 876 - -
Bma04g00251 891 ProSiteProfiles Protein kinase domain profile. 594 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00251 891 SMART serkin_6 594 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00251 891 SUPERFAMILY Protein kinase-like (PK-like) 585 869 IPR011009 -
Bma04g00251 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672|GO:0006468
Bma04g00251 891 Gene3D Phosphorylase Kinase; domain 1 560 670 - -
Bma04g00251 891 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Bma04g00251 891 Pfam Protein kinase domain 595 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00251 891 SUPERFAMILY L domain-like 5 295 - -
Bma04g00251 891 Gene3D Ribonuclease Inhibitor 3 231 IPR032675 -
Bma04g00251 891 SUPERFAMILY RNI-like 204 489 - -
Bma04g00251 891 Gene3D Transferase(Phosphotransferase) domain 1 671 873 - -
Bma04g00251 891 SMART LRR_typ_2 378 402 IPR003591 -
Bma04g00251 891 SMART LRR_typ_2 163 186 IPR003591 -
Bma04g00251 891 SMART LRR_typ_2 474 497 IPR003591 -
Bma04g00251 891 SMART LRR_typ_2 187 210 IPR003591 -
Bma04g00251 891 SMART LRR_typ_2 235 259 IPR003591 -
Bma04g00251 891 SMART LRR_typ_2 90 114 IPR003591 -
Bma04g00251 891 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 3 876 - -
Bma04g00251 891 Pfam Leucine Rich repeat 475 490 IPR001611 GO:0005515
Bma04g00251 891 Pfam Leucine Rich repeat 426 439 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00251 Bma-Chr4:2139326 Bma15g01094 Bma-Chr15:43526502 0 dispersed
Bma04g00251 Bma-Chr4:2139326 Bma09g00155 Bma-Chr9:5397708 1.68E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66433 PF00069 Pkinase 4.80E-45 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00251 K00924 - jre:108982112 1259.97