Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00254 ATGTCGCCTGGGAGAAAGATTACCCTGAAGAGCTCCGATGGGGAGACTTTCGAGGTTGACGAGGCTGTTGCTTTGGAATCGCTCACCATTAAACATTTGATTGAGGACGATTGTGCCGACAGTGGGATTCCACTCCCCAACGTCACCAGCAAGATCCTATCAAAGGTTATTGAGTACTGCAAGAAGCACGTCGACTCCGCTAAGGCTGAAGATCGTGCTTCTACTGCCGATGAGGATCTCAAGAGTTGGGACCACGAGTTCGTCAAGGTTGATCAGGCCACGCTATTTGACCTCATCCTGGCTGCTAATTATCTGAACATCAAGAGCTTGCTGGATCTGACATGCCAGACTGTTGCTGACATGATCAAGGGAAAAACACCAGAGGAGATCCGCAAGACATTCAACATCAAGAATGACTTCACTCCTGAGGAAGAGGAGGAGGTTCGTAGGGAGAATCAATGGGCCTTTGAGTAA 474 48.95 MSPGRKITLKSSDGETFEVDEAVALESLTIKHLIEDDCADSGIPLPNVTSKILSKVIEYCKKHVDSAKAEDRASTADEDLKSWDHEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2155932 2157161 + Bma018706.1 Bma04g00254 80623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00254 157 PIRSF SCF_Skp 1 157 IPR016897 GO:0006511
Bma04g00254 157 SMART skp1_3 4 107 IPR001232 GO:0006511
Bma04g00254 157 Gene3D Potassium Channel Kv1.1; Chain A 3 157 IPR011333 -
Bma04g00254 157 SUPERFAMILY Skp1 dimerisation domain-like 80 155 IPR036296 GO:0006511
Bma04g00254 157 CDD BTB_POZ_SKP1 6 122 - -
Bma04g00254 157 Pfam Skp1 family, dimerisation domain 108 155 IPR016072 GO:0006511
Bma04g00254 157 PANTHER SKP1 1 157 IPR016897 GO:0006511
Bma04g00254 157 SUPERFAMILY POZ domain 5 66 IPR011333 -
Bma04g00254 157 Pfam Skp1 family, tetramerisation domain 6 64 IPR016073 GO:0006511
Bma04g00254 157 PANTHER PUTATIVE-RELATED 1 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00254 K03094 SKP1, CBF3D; S-phase kinase-associated protein 1 - jre:109011235 287.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00254 Bma-Chr4:2155932 Bma15g00980 Bma-Chr15:37994724 3.26E-35 dispersed
Bma03g00072 Bma-Chr3:574052 Bma04g00254 Bma-Chr4:2155932 2.65E-20 transposed
Bma14g00247 Bma-Chr14:2951966 Bma04g00254 Bma-Chr4:2155932 3.38E-38 transposed
Bma01g00717 Bma-Chr1:6569855 Bma04g00254 Bma-Chr4:2155932 3.23E-23 wgd
Bma03g00612 Bma-Chr3:5028677 Bma04g00254 Bma-Chr4:2155932 1.24E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1164 . . . Bda03g00294 . Bpe04g00254 Bma04g00254 . . . . . . Car12g00369 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000912 2 2 2 2 2 3 4 3 3 2 3 3 3 3 3 3 3 2 5 3 2 3 3 3 2 3 3 4 3 4 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00254 Bma_Chr04 FPKM 1.869071 2.273069 0.746218 0.729137 2.027047 1.853199 1.65671 0.0 0.0 0.191165