Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00259 ATGAAGGCCAAAGGCCTGTACGGAGTTTTTTTTTGGCAGGTAAAAGCTAGGGCTCTCGAAGGGAAGGTCGTCGGGCTGTACTTCTCCGCGAACTGGAATCCAGAGTGCAGGAACTTCACCGAGACTCTCGTCAAGTTGTACCAGCAGCTCCAAAATAACCATTCGAACTTCGAAATCGTCTTCGTATCTTCCGACGAAGATTCCGAGGCTTTCAAAGCTTACCACTCATGCATGCCATGGCCGGCGATCCCGTTCTCCCATTTGGAAATCAAAAAGGCCTTGAATCGACGGTTTGGTATTGAAGAAATTCCATGTTTGATATTAATTCAACCCTACCAAAACAACGAAGATGAAGAAGAAATTTTGGAAAATGGGGTTGATTTGGTTTATCGATATGGAGTTGAAGCTTTTCCCTTCACCAAACAGCGGCTAAAAGAATTGAAGGATGAAGAAAGAGAGAAACAAGAGAATCAGACCATCGCCAATTTACTGTCAAACTACCATAGAAACTATCTATTGGGTCACACCCAGTTCGATCAGGTGTCTATAGCTTCATTAATGGGGAAGACGATAGGTCTGTACTTCTCAGCGAAGTGGTGCTTACCTGGAGTTTTCACGCCTAAGCTCATCTCCATCTACAATAAGATAAACCATTCTTCTCGAATGAACCAAGAACACGACACGCTCTTCGATATAGTGTTCGTCTCCATCGACAAAAACGAAGCCTCTTTCGATTCCTACTTCAAAACCATGCCATGGCTAGCTCTGCCCTTTGGTGACGCGAATATAGCAAATCTGGTCAGGCATTTCGACGTTAGAGACATTCCTTGTCTGGTAATCATCGGCCCGGATGGGAAAACCGTAACCTAA 870 44.6 MKAKGLYGVFFWQVKARALEGKVVGLYFSANWNPECRNFTETLVKLYQQLQNNHSNFEIVFVSSDEDSEAFKAYHSCMPWPAIPFSHLEIKKALNRRFGIEEIPCLILIQPYQNNEDEEEILENGVDLVYRYGVEAFPFTKQRLKELKDEEREKQENQTIANLLSNYHRNYLLGHTQFDQVSIASLMGKTIGLYFSAKWCLPGVFTPKLISIYNKINHSSRMNQEHDTLFDIVFVSIDKNEASFDSYFKTMPWLALPFGDANIANLVRHFDVRDIPCLVIIGPDGKTVT 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2174774 2175723 + Bma018711.1 Bma04g00259 80628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00259 289 PANTHER THIOREDOXIN [SEE ALSO XTR] 14 112 - -
Bma04g00259 289 PANTHER THIOREDOXIN [SEE ALSO XTR] 120 289 - -
Bma04g00259 289 PANTHER THIOREDOXIN 14 112 - -
Bma04g00259 289 PANTHER THIOREDOXIN 120 289 - -
Bma04g00259 289 SUPERFAMILY Thioredoxin-like 11 111 IPR036249 -
Bma04g00259 289 Pfam Thioredoxin-like 21 111 IPR012336 -
Bma04g00259 289 Pfam Thioredoxin-like 188 286 IPR012336 -
Bma04g00259 289 Gene3D Glutaredoxin 12 141 - -
Bma04g00259 289 Gene3D Glutaredoxin 166 289 - -
Bma04g00259 289 ProSiteProfiles Thioredoxin domain profile. 1 153 IPR013766 -
Bma04g00259 289 SUPERFAMILY Thioredoxin-like 173 288 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00259 K17609 NXN; nucleoredoxin [EC:1.8.1.8] - csv:101212204 359.762
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00047 Bma-Chr1:525956 Bma04g00259 Bma-Chr4:2174774 6.57E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g172 . Blo12g00875 . . . Bpe04g00258 Bma04g00259 . . . . Cma09g00088 . . . Cpe06g00051 . . . . . . . . . . . . . . . . . . . Lsi04g01774 . Chy04g00395 . . . . . . . . . . . Cmo09g00086 . . . Car09g00076 . . . . . . . . . Cla05g01601 Cam05g1712 Cec05g1712 Cco05g1769 Clacu05g1699 Cmu05g1588 Cre05g1707 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012145 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00259 Bma_Chr04 FPKM 7.566952 7.581631 27.838459 31.889244 421.360596 314.953308 423.413971 17.827215 17.645124 19.497746