Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00261 GGGAGCTCGAAACAACTATTCATGGCTCTGATCAGGACTAAGCCAAGTTTCCCGCACTTTCTCTCTTCTCTCTCGCGGCAAGTGTGCCAGCGCTCTGTTCTTTTTTCATTCTCGTCATCTTCTTCTCTCGAAGATCATTTCGAAGATGAAGGCGGAAATAGAAATACTAACGATGCCCCTGAGATCGAGATTTCTTCAGAGGAAACCCTAGTCGCCGACGAATTGCATGCCGTAATCAAGGACCACCATCGCAGAAACCCGACCGCCAATCCTAATATGCCTCCTTCTTCACCTGACCTGACTATTTCCGCTCTTTCACATGATTTCTCTAAAATCTCGGCCGTTCATTCCATATCTGCATCAATCGCCAGCCGCGTGATTGAGAAATGCGGCGGAGTCCGCCATGGTATCCCTTTCCTTCAAGCCCTAGCGTTCTTCAATTGGGTCACTACTCGCGAGGGGTTCGAGAACAATGTACAGCCATATAACGAGATGGTCGACCTAGCGGGAAAGGTAAGGCAATTTGATTTAGCTTGGCATCTGATTGACTTGATGAAATCTAGAAACGTAGAAATTACAGTAGAAACGTTCTCAATTCTTGTACGTCGGTATGTGAGAGCGGGATTAGCGGCAGAAGCTGTCCTCGCCTTTAATCGTATGGAGGATTATGGTTGCAAACCCGACAAAATCGCTTTCTCCATATTAATCAGTATCCTTTGTAAGAAGAGAAGGGCAAGCGAAGCTCAATCATTTTTTGATAGGTTAAAGGATAGGTTTGAGCTTGATGTGGTTGTGTACTCTAGCTTGGTTCATGGATGGTGTCGAGCTGGTAATATTTCAGAGGCGGAGAGGGTGTTCGGGGAGATGAAGATGGCTGGCATAAAACCGAATGTGTATACTTATAGTATAGTGATTGATGGATTGTGTAGATGTGGCCAAATTACACGAGCCCATGATGTTTTAGCAGAGATGATTGATGAAAATTGTAACCCGAATGCTGTAATATTCAACAATCTAATGAGGGTTCACGTGAAGGCGGGCAGAACTGAAAAGGTATTGCAAGTGTATAATCAGATGAAGAGGATCGGTTGCCCTGCCGACATAATTACTTATAATTTCCTTATTGATAGTCATTGCAGGGATGGCAACCTTGAAGCAGCTATGAAAGTCTTTTATTCGATGATTAAGAAAGACTGCAGTCCAAATGCTTCAACTGTCAATCCTATATTCAGAAGCATTGCAAAACTACGAGATGTAAATGGTGCTCACAGGTTAATTGGTAGAATGAAAGAATCAAAATGTAAACCCAATACAGTAACCTACAATATATTGATGCAGATGTTTGCAGAATCGAAATCAGCTGATATGGTTTTGAAGTTGAAGAAGGAAATGGATGTGAATGAGGTCGAGCCTAATGTGAATACTTATAGGATTTTGATTTTGCTGTATTGTGGGATGGGGCATTGGAACAATGCCTATAATTTCTTCAGGGAGATGATTGAGGAGAAATGCTTAAAACCTGGCCAGCCTGTGTATGAGATGGTTCTGCAACAATTAAGGAAAGCAGGGCAGTTGAAAAAGCACGAGGAATTAGTGGAGAAGATGATTGAGAGAGGATTTGCTGCTCGGCCACTGTAG 1638 43.04 GSSKQLFMALIRTKPSFPHFLSSLSRQVCQRSVLFSFSSSSSLEDHFEDEGGNRNTNDAPEIEISSEETLVADELHAVIKDHHRRNPTANPNMPPSSPDLTISALSHDFSKISAVHSISASIASRVIEKCGGVRHGIPFLQALAFFNWVTTREGFENNVQPYNEMVDLAGKVRQFDLAWHLIDLMKSRNVEITVETFSILVRRYVRAGLAAEAVLAFNRMEDYGCKPDKIAFSILISILCKKRRASEAQSFFDRLKDRFELDVVVYSSLVHGWCRAGNISEAERVFGEMKMAGIKPNVYTYSIVIDGLCRCGQITRAHDVLAEMIDENCNPNAVIFNNLMRVHVKAGRTEKVLQVYNQMKRIGCPADIITYNFLIDSHCRDGNLEAAMKVFYSMIKKDCSPNASTVNPIFRSIAKLRDVNGAHRLIGRMKESKCKPNTVTYNILMQMFAESKSADMVLKLKKEMDVNEVEPNVNTYRILILLYCGMGHWNNAYNFFREMIEEKCLKPGQPVYEMVLQQLRKAGQLKKHEELVEKMIERGFAARPL 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2179118 2180755 + Bma018713.1 Bma04g00261 80630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00261 545 TIGRFAM PPR: pentatricopeptide repeat domain 369 403 IPR002885 -
Bma04g00261 545 TIGRFAM PPR: pentatricopeptide repeat domain 405 438 IPR002885 -
Bma04g00261 545 TIGRFAM PPR: pentatricopeptide repeat domain 439 473 IPR002885 -
Bma04g00261 545 TIGRFAM PPR: pentatricopeptide repeat domain 475 504 IPR002885 -
Bma04g00261 545 TIGRFAM PPR: pentatricopeptide repeat domain 264 298 IPR002885 -
Bma04g00261 545 TIGRFAM PPR: pentatricopeptide repeat domain 334 367 IPR002885 -
Bma04g00261 545 TIGRFAM PPR: pentatricopeptide repeat domain 299 333 IPR002885 -
Bma04g00261 545 TIGRFAM PPR: pentatricopeptide repeat domain 196 228 IPR002885 -
Bma04g00261 545 TIGRFAM PPR: pentatricopeptide repeat domain 162 193 IPR002885 -
Bma04g00261 545 Gene3D Tetratricopeptide repeat domain 327 413 IPR011990 GO:0005515
Bma04g00261 545 Gene3D Tetratricopeptide repeat domain 109 248 IPR011990 GO:0005515
Bma04g00261 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 258 IPR002885 -
Bma04g00261 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Bma04g00261 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Bma04g00261 545 Gene3D Tetratricopeptide repeat domain 414 544 IPR011990 GO:0005515
Bma04g00261 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Bma04g00261 545 SUPERFAMILY TPR-like 226 502 IPR011990 GO:0005515
Bma04g00261 545 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 19 544 - -
Bma04g00261 545 Pfam PPR repeat 224 254 IPR002885 -
Bma04g00261 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Bma04g00261 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Bma04g00261 545 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 19 544 - -
Bma04g00261 545 Gene3D Tetratricopeptide repeat domain 254 326 IPR011990 GO:0005515
Bma04g00261 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Bma04g00261 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Bma04g00261 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Bma04g00261 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Bma04g00261 545 Pfam PPR repeat family 262 310 IPR002885 -
Bma04g00261 545 Pfam PPR repeat family 436 484 IPR002885 -
Bma04g00261 545 Pfam PPR repeat family 331 380 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00261 - - - zju:107422771 801.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00261 Bma-Chr4:2179118 Bma15g00243 Bma-Chr15:2443606 1.59E-17 dispersed
Bma04g00261 Bma-Chr4:2179118 Bma02g00104 Bma-Chr2:937437 2.94E-23 transposed
Bma04g00261 Bma-Chr4:2179118 Bma01g01883 Bma-Chr1:69321843 3.21E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g164 . Blo12g00873 . Bda03g00299 . Bpe04g00260 Bma04g00261 . . . . . Car01g01561 . . . . . . . . . . . . . . . . . . . Cone7ag1913 . . Lsi04g01777 . Chy04g00393 . . . . . . Bpe14g00404 . . . . . . . . . . . . . . . . . . Cla05g01599 Cam05g1710 Cec05g1710 Cco05g1767 Clacu05g1697 Cmu05g1586 Cre05g1705 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012790 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00261 Bma_Chr04 FPKM 22.365993 19.876612 25.23205 27.526777 28.466616 28.503481 28.295483 25.688725 26.493956 24.343864