Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00264 ATGGCGTCCGTAACCTCACGAGCAGTCGCTATACCCTCCTTCAGCGGCCTTAAAGCTTCCGGCGCCGGAAAAGTCCCAGCCATCGTCAAGCTCTCGCCCTTGCCTACTCCAATACTTCGTGTTAATGCTTCTCTGAAAGACATCGGCGTCGCAGTAGTAGCCACTGCCGCTAGCGCAGTGCTTGCTAGCAACGCATTGGCTGCAACCATTCTTCTAGGCAGTGACACCGGCGAGTTGGCTTTTGTCCCTAACAATTTCTCGGTGGCATCCGGTGAGAAAATCGTGTTCAAAAACAACTCCGGGTATCCTCACAACGTTGTGTTCGACCCAGACGAGGTACCCGCCGGAGTTGACGCGGCTAAAATCTCCATGGGCGAGGAAGATCTTCTGAATGCCCCCGGTGAGGAATATTCGGTGACTTTGGTCGCGAAAGGTACCTACTCTTTCTACTGTTCTCCTCATCAGGGAGCTGGAATGGTCGGAAAAGTTACAGTCAACTAA 501 52.89 MASVTSRAVAIPSFSGLKASGAGKVPAIVKLSPLPTPILRVNASLKDIGVAVVATAASAVLASNALAATILLGSDTGELAFVPNNFSVASGEKIVFKNNSGYPHNVVFDPDEVPAGVDAAKISMGEEDLLNAPGEEYSVTLVAKGTYSFYCSPHQGAGMVGKVTVN 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2184193 2184693 - Bma018716.1 Bma04g00264 80633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00264 166 PRINTS Type I copper blue protein family signature 143 157 IPR001235 GO:0005507|GO:0009055
Bma04g00264 166 PRINTS Type I copper blue protein family signature 87 100 IPR001235 GO:0005507|GO:0009055
Bma04g00264 166 PRINTS Type I copper blue protein family signature 102 117 IPR001235 GO:0005507|GO:0009055
Bma04g00264 166 PRINTS Plastocyanin signature 145 164 IPR002387 GO:0005507|GO:0009055
Bma04g00264 166 PRINTS Plastocyanin signature 96 114 IPR002387 GO:0005507|GO:0009055
Bma04g00264 166 PRINTS Plastocyanin signature 73 92 IPR002387 GO:0005507|GO:0009055
Bma04g00264 166 Pfam Copper binding proteins, plastocyanin/azurin family 69 166 IPR000923 GO:0005507|GO:0009055
Bma04g00264 166 PANTHER PLASTOCYANIN 1 166 - -
Bma04g00264 166 SUPERFAMILY Cupredoxins 67 166 IPR008972 -
Bma04g00264 166 PANTHER PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED 1 166 - -
Bma04g00264 166 ProSitePatterns Type-1 copper (blue) proteins signature. 145 159 IPR028871 -
Bma04g00264 166 TIGRFAM cyanin_plasto: plastocyanin 69 166 IPR002387 GO:0005507|GO:0009055
Bma04g00264 166 CDD Plastocyanin 68 166 IPR002387 GO:0005507|GO:0009055
Bma04g00264 166 Gene3D - 69 166 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00264 K02638 petE; plastocyanin - gmx:100306554 234.958
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02387 Bma04g00264 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02387 Bma-Chr1:81455950 Bma04g00264 Bma-Chr4:2184193 3.36E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g157 Blo01g01613 . . . Bpe02g00333 Bpe04g00263 Bma04g00264 Bma01g02387 . . . Cma09g00082 . . . Cpe06g00046 . . . . . . . . . . . . . . . . . . . Lsi04g01781 . Chy04g00389 . . . . . . . . . . . Cmo09g00081 . . . Car09g00071 . . . . . . . . . Cla05g01595 Cam05g1706 Cec05g1706 Cco05g1762 Clacu05g1693 Cmu05g1582 Cre05g1699 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011843 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 0 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00264 Bma_Chr04 FPKM 43.20726 40.470417 0.878537 0.579393 6.343744 5.127281 4.850425 0.0 0.0 0.0