Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00265 ATGGCTCAAACAGAAGTGCTGGTTAAGATTGACAGTGATGGCACAGACCAGGAAATAGGTCTTTCAACGATCAATACAGATGTCTCGGCCGAAGAAGCTCAGAGGGAAAACGGAACAGGAAGTGTTCTGCCTAGAGACACTGAAGCTGGTGATCAAGGAAATAGCCAGTCGTCAACAGATGCAACTTTGCCATGTCAGAAGACAGCTGTTGCTAAAGTCAAGCAACGAGGATACCTGATTAAAGTCACAATTCTTCAGATGGTAATTCTCGTTTCTACTTTAGCTGCTCTACTTTGCAGTTTTTTGGTTTCTAAGCTAAAGAGGCTTGAACTATGCGGTCTTCCATTATGGAAATGGGCATTAATGGCTTTTGTTCTTATCTCTGGACGCTTAGTTTCAAGTTGGATAGTCTGGGCAGTCGGGTATTTCATGGAGCGAAATTTCATTCTGAGAAAACGGGTTTTATATTTTATTTACGTGTTAAGGAAACCTGTTCGGAGCTGCCTCTGGTTAACAATTGTTTTGCTTGTGTGGGTCGTAGTAATAGACTGTGAGCTAGAAAAGGAGACAAAAACTCCGTCTCTACCTTACATAACTAAGATTTTGGCTTGTCTCCTTGTCAGTTACTTTATATGGCTTCTGAAAACACTACTTATTAAGGTTTTCGTCATGTCGTTCCATATAAAAGCCTTCTTCGAACAGCTTAGAAAAGCTCAGTTCAATCAGTACGTGATTAAGAGGCTCTCTCTCCCTCCGTCAAAAGAGAGGAAAAGACCGTCGATGCGAATAGTGGAGGAATGTTTTACATTGGGAAACGGTGGTTGGTTTTCGATGCGGAATGGTGATGGAGAATATGAGAGAATGCGCATGTCTAGTTTGTTGAGTGAAGATAAGAAAAATATTTCAGCTTGGATTATGAAGGGGATGAAAGGAAGCATTCGGCGGCGAAACTTTCTTATACTGGATCAAGATTCAGACGCATCAACGAAGTCAAAAAAGGAGATTAGGACTGAAGATGAAGCGAGAAAGGCAGCGGTGTCTATATTCTGTCACGTCACTGAGCATAACCGGCGTAACGATGGATTTATTTTACTGGAGGACGTGAAAAATTATATGCAAGAACCCGTGGCAATGAAGGCTATGCAGGATTTTCAAGGAGCGGATACAGCTGAGAGAGTTGGTCTATCTTCTTTCTGTGATTGGATGGTTGGTGCTTGCCGACAGAGGAAGGCCCTTTCATCGTCTCTCTCTGATACAAAATCAGCTGTCAATGACCTTCGCACCAAGTTCAATATATTCACGATTGTAATCATTATAATCTTCTGGTTCTTTATCTTGGGACTTCCCGCTGCTGACATTCTTATCTACATGGCTGCACAGCTTGTTGTGCTAGCGTTCATTTTTGGAAATACTTGCAAGACAGTCTTTGAAGGTTTCGTCTTTCTTTTCGTGATACATCCCTTTAACGTAGGCGATCTTTGCGAGGTTGATGGGGTGAAGATGGTAGTGAAGAAAATGAAGATATTAACTACGGTGTTTATCAGAGAAGATAACCAGAAGATTCTGTTTCCCAACAGTGTCCTTGCTACCAAACCCATTACTAATTACCATCGTAGTAAGAACGTCAGAGACGTAGTTGATATCACAGTGGACGTCTCGACTCCAACGGACAAGCTCCGATCAATGGAACAACAAATTCAAAGGTTTGAACTTGAACTAGCCCTTTTCTTCTTTTAA 1737 41.8 MAQTEVLVKIDSDGTDQEIGLSTINTDVSAEEAQRENGTGSVLPRDTEAGDQGNSQSSTDATLPCQKTAVAKVKQRGYLIKVTILQMVILVSTLAALLCSFLVSKLKRLELCGLPLWKWALMAFVLISGRLVSSWIVWAVGYFMERNFILRKRVLYFIYVLRKPVRSCLWLTIVLLVWVVVIDCELEKETKTPSLPYITKILACLLVSYFIWLLKTLLIKVFVMSFHIKAFFEQLRKAQFNQYVIKRLSLPPSKERKRPSMRIVEECFTLGNGGWFSMRNGDGEYERMRMSSLLSEDKKNISAWIMKGMKGSIRRRNFLILDQDSDASTKSKKEIRTEDEARKAAVSIFCHVTEHNRRNDGFILLEDVKNYMQEPVAMKAMQDFQGADTAERVGLSSFCDWMVGACRQRKALSSSLSDTKSAVNDLRTKFNIFTIVIIIIFWFFILGLPAADILIYMAAQLVVLAFIFGNTCKTVFEGFVFLFVIHPFNVGDLCEVDGVKMVVKKMKILTTVFIREDNQKILFPNSVLATKPITNYHRSKNVRDVVDITVDVSTPTDKLRSMEQQIQRFELELALFFF 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2189180 2198974 + Bma018717.1 Bma04g00265 80634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00265 578 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 568 - -
Bma04g00265 578 MobiDBLite consensus disorder prediction 30 61 - -
Bma04g00265 578 Pfam Mechanosensitive ion channel 430 569 IPR006685 GO:0016020|GO:0055085
Bma04g00265 578 SUPERFAMILY Sm-like ribonucleoproteins 477 536 IPR010920 -
Bma04g00265 578 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 568 IPR016688 -
Bma04g00265 578 Gene3D - 487 536 IPR023408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00265 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - mnt:21394897 404.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00265 Bma-Chr4:2189180 Bma12g00910 Bma-Chr12:40544786 1.36E-131 dispersed
Bma04g00265 Bma-Chr4:2189180 Bma04g00266 Bma-Chr4:2202056 0 tandem
Bma03g00619 Bma-Chr3:5110518 Bma04g00265 Bma-Chr4:2189180 2.82E-125 wgd
Bma04g00229 Bma-Chr4:1984508 Bma04g00265 Bma-Chr4:2189180 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g144 Blo01g01450 Blo12g01027 . Bda03g00130 . . Bma04g00265 . . . Cma01g01705 . . . . . . . . . . . . . Cla05g01618 Cam05g1731 Cec05g1736 Cco05g1792 Clacu05g1720 Cmu05g1604 Cre05g1731 Cone4ag1693 . . . Lsi04g01394 . . . . . . . . Bpe04g00114 . . . Cmo01g01806 . . . Car01g01323 . . Cpe02g00286 Bhi09g03090 . . . . . . . . . . . . . . . . Cme07g00186
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018082 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00265 Bma_Chr04 FPKM 21.453009 23.615829 21.221004 23.236532 17.982651 20.342781 17.030478 26.550695 23.356337 22.04632