Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00266 ATGGCTCAAACAGAAGTGCTGGTTAAGATTGACAGTGATGGCAGAGACCAGGAAATAGGTCTTTCACCGATCAATGCAGATGTCTCGGCCGAAGAAGCTCAGAGGGAAAACAGAACAGAAAGTGTTCTGCCTAGAGACACTGAAGCTGGTGATCAAGGAAATAGCCAGTCGTCAACAGATACAACTTTGCCATGTCACAAGGCAGCTGTTGGTAAAGTCAAGCAACGAGGAAACCTGAGTAAAGTCACAATTCTTCAGATGGTAATTCTCGTTTCTACTTTATCTGCTCTACTTTGCAGTCTTTTGGTTTCTAAGCTAAAGAGGCTTGAACGATGCGGTCTTCCATTATGGAAATGGGCATTAATGGCTTTTGTTCTTATCTCTGGACGCTTAGTTTCAAGTTGGATAGTCTGGGCAGTCGTGTATTTCATGGAGCGAAATTACATTCTGAGAAAACGGGCTTTATATTTTACTTATGTGTTAAGGAAACCTGTTCGGAGCTGCCTCTGGTTATCAATTGTTTTGCTTGTGTGGGTCGTAGTAATAGATTGTGAGCTAGAAAAGGAGACAAAAGCTCCGGCTCTACCTTACATAACTAAGATTTTGGCTTGTCTCCTTGTCAGTTACTTTATATGGCTTCTGAAAACACTACTTATTAAGGTTTTCGTCATGTCGTTCCATATAAAAACCTTCTTCGAACGGCTTAGAAAAGCTCTGTTCAATCAGTACGTGATTAAGAGGCTCTCTCGCCCTCCGTCAAAAGAGAGGAAAAGACCGTCGATGCAAATAGTGCAGGAATGTTTTACATTGGGAAACAGTTGTGGGTTTTCGATGCAGCATGGTGATGAAGAATCTGAGACAATGAGTATGTCTAGTTTGTTGAATGAAGATAAGAAAAATATTTCAGCTTGGATTATGAAGAAGATGAAAGGAAGCATTCGGCGGAGAAACTTTCTTACACTGGATCAAGATTCAGACGCATCAACGAAGTCAGAAAAGGAGATTAGGACTGAAGATGAAGCGAGAAAGGCAGCGGAGTCTATATTCTGGCACGTCACTAAGCATAACGGGCGTAACGATGGATTTATTTTACTGGAGGACGTGAAAAATTATATGCAAGAACCCGTGGCAATGAAGGCTATGCAGGATTTTCAAGGAGCGGATACAGCTGAGAGAGTTGGTCTATCTTCTTTCTGTGATTGGATGGTTGGTGCTTGCAGACAGAGGAAGGCACTTTCATCGTCTCTCTCTGATACAAAATCAGCTGTCAATGACCTTCGCACCAAGTTCAATACATTCACGATTGTAATCATTATAATCTTCTGGTTCTTTATCTTGGAACTTCCCGCTCCTGACACTCTATTCTACACTTCTGCACAGCTTGTTGTGCTAGCGTTCATTTTTGGAAATACTTGCAAGACAGTCTTTGAAGGTTTCGTCTTTCTTTTCGTGATACATCCCTTTAACGTAGGCGATCTTTGCGAGGTTGATGGGGTGAAGATGGTAGTGAAGAAAATGAAGATATTAACTACGGTGTTTATCAGAGAAGATAACCAGAAGATTCTGTTTCCCAACAGTGTCCTTGCTACTAAACCCATTACTAATTACCATCGTAGTAAGAACGTCAGAGACGTAATTGATATCACAGTGGACGTCTCGACTCCAACGGAAAAGCTCCGATCAATGGAACAACAAATTCAAAGGTTTGAACTTGAACTAGCCCTTTTCTTCTTTTAA 1737 41.39 MAQTEVLVKIDSDGRDQEIGLSPINADVSAEEAQRENRTESVLPRDTEAGDQGNSQSSTDTTLPCHKAAVGKVKQRGNLSKVTILQMVILVSTLSALLCSLLVSKLKRLERCGLPLWKWALMAFVLISGRLVSSWIVWAVVYFMERNYILRKRALYFTYVLRKPVRSCLWLSIVLLVWVVVIDCELEKETKAPALPYITKILACLLVSYFIWLLKTLLIKVFVMSFHIKTFFERLRKALFNQYVIKRLSRPPSKERKRPSMQIVQECFTLGNSCGFSMQHGDEESETMSMSSLLNEDKKNISAWIMKKMKGSIRRRNFLTLDQDSDASTKSEKEIRTEDEARKAAESIFWHVTKHNGRNDGFILLEDVKNYMQEPVAMKAMQDFQGADTAERVGLSSFCDWMVGACRQRKALSSSLSDTKSAVNDLRTKFNTFTIVIIIIFWFFILELPAPDTLFYTSAQLVVLAFIFGNTCKTVFEGFVFLFVIHPFNVGDLCEVDGVKMVVKKMKILTTVFIREDNQKILFPNSVLATKPITNYHRSKNVRDVIDITVDVSTPTEKLRSMEQQIQRFELELALFFF 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2202056 2204337 + Bma018718.1 Bma04g00266 80635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00266 578 MobiDBLite consensus disorder prediction 31 45 - -
Bma04g00266 578 SUPERFAMILY Sm-like ribonucleoproteins 477 536 IPR010920 -
Bma04g00266 578 Gene3D - 487 536 IPR023408 -
Bma04g00266 578 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 568 - -
Bma04g00266 578 MobiDBLite consensus disorder prediction 16 62 - -
Bma04g00266 578 Pfam Mechanosensitive ion channel 432 569 IPR006685 GO:0016020|GO:0055085
Bma04g00266 578 MobiDBLite consensus disorder prediction 48 62 - -
Bma04g00266 578 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 568 IPR016688 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00266 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csin:114317903 405.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00229 Bma-Chr4:1984508 Bma04g00266 Bma-Chr4:2202056 0 dispersed
Bma04g00266 Bma-Chr4:2202056 Bma12g00910 Bma-Chr12:40544786 7.49E-138 dispersed
Bma04g00265 Bma-Chr4:2189180 Bma04g00266 Bma-Chr4:2202056 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g152 . . . Bda03g00302 . Bpe04g00264 Bma04g00266 . . . . Cma09g00081 . . . Cpe06g00045 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed10g2110 . Cmo09g00080 . . . Car09g00070 . . Bhi09g01887 Tan01g3346 Cmetu01g0289 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018082 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00266 Bma_Chr04 FPKM 15.341326 14.088128 15.418201 16.729368 11.457365 11.495621 12.118265 22.153013 21.108412 26.867039