Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00269 ATGGAGGGAGACTCAGAAACAAGTGCTCCCAGCGCACCGAAGCTAGAACTCGTTCAAGAACCGGAACTGAAAAGGATTAAAATGTCTTCGACGACCGACGACGACAACGACTACGCTAACACCGGTGAGACCAAAAAACAAAGATACAAGCGACGGAAAGTTGCAATTTTCTTTGCGTACTGTGGCGTTGGTTATCAAGGCATGCAGAAAAACCCAGGCGCTAAAACAATCGAATCAGATCTAGAAGAAGCACTTTACCTCGCTGGAGCTGTTCCGGAGCAAGATCGCGGGAATTCTAAGCGCTATGATTGGGCTCGTTCTGCGCGTACAGATAAGGGAGTAAGTGCCGTTGGTCAGGTCGTCTCTGGAAGGTTCTACATTGACCCCCCGGGGTTCGTCGATCGCCTAAACTCAAACCTTTCGCCTCAGATTCGAATTTTTGGCTACAAGCGCGTGACAGCTTCGTTTAATGCTAAGAAATTCTGTGATCGGAGAAGGTATGTGTATCTCCTTCCTGTTTTTGCTCTTGATCCAAATGCGCATCGAGATCGAGAGAGTGTTTTGGCTAGTTTGGGTTCTGAAAATGAACTGGTTAAATGTTTAGAATGCTCTGAGAGAGGACGTAAGGTTGAAGGTTTGATGGGAAAGCGTAATTTGGAATCAAAAGCTTCAAATGCTGTTTCAGACATTTCTTCGGACGTTGATAATACTATACTAAACTCTGAGTTTGAGGAGGAAAGAAAAGAGTTATCAGAAAATGCAAATGCGATTGACTTAAATTGGGAGGCCCCAAAAGCAGTAGATTGTGTTGGTGAAATTAGGAATAGTGAAACCAACGAGAGTAAAGCAACTGACATTCTGAAGAAAGAGAGTGATAATGGGATGGTGAAGCCTGAAAAAAGGTTTTGTTATGGCGAGGAGGAGAGAGATAGGTTTAACAAGATATTGAATTTTTATGTTGGGACTCATAACTTCCATAACTTCACCACCAGAACGAAAGCAGAGGACGCCGCTGCGCAGCGTTTCATTGTTTCTTTTGATGCAAAAACCACCGTCTTTGTTGATGGAATCGAGTTTATCAAGTGTGTGGTGGTGGGGCAGAGCTTCATGCTTCATCAAATACGTAAGATGATGGGACTTGCGGTGGCGATAATGAGAAATTGCACTTCAGAGTCCTTGATTGAGAAGGCTTTGCAAAAAGATATTAACATTAATGTGCCGACTGCACCCGAAGTTGGCTTGTTCTTGGAAGAGTGTATATTTTCATCGTATAATAAGAAGTGGAACGACACTCACGAAGAGGTATCGATGAAAGCATATGAAGAAGAGGCTGAAGAATTCAAAATGAAGCAAATATACTCCCATATTGCATCTACCGAGAACAAAGACGGAGTTGTGGGTCTTTGGTTGCATTCTCTAAATCACCGTAACTATCCTGATTTACTACTAAAAGACGGCGTTGAAGGAGAAGATGACGGGCCGAAGAAAATGGAGGAGTGA 1500 43.4 MEGDSETSAPSAPKLELVQEPELKRIKMSSTTDDDNDYANTGETKKQRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIESDLEEALYLAGAVPEQDRGNSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLLPVFALDPNAHRDRESVLASLGSENELVKCLECSERGRKVEGLMGKRNLESKASNAVSDISSDVDNTILNSEFEEERKELSENANAIDLNWEAPKAVDCVGEIRNSETNESKATDILKKESDNGMVKPEKRFCYGEEERDRFNKILNFYVGTHNFHNFTTRTKAEDAAAQRFIVSFDAKTTVFVDGIEFIKCVVVGQSFMLHQIRKMMGLAVAIMRNCTSESLIEKALQKDININVPTAPEVGLFLEECIFSSYNKKWNDTHEEVSMKAYEEEAEEFKMKQIYSHIASTENKDGVVGLWLHSLNHRNYPDLLLKDGVEGEDDGPKKMEE 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2210261 2211836 - Bma018721.1 Bma04g00269 80638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00269 499 MobiDBLite consensus disorder prediction 18 45 - -
Bma04g00269 499 PANTHER PSEUDOURIDYLATE SYNTHASE 30 482 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bma04g00269 499 TIGRFAM hisT_truA: tRNA pseudouridine(38-40) synthase 52 415 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bma04g00269 499 SUPERFAMILY Pseudouridine synthase 50 431 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bma04g00269 499 MobiDBLite consensus disorder prediction 1 45 - -
Bma04g00269 499 Coils Coil 240 260 - -
Bma04g00269 499 CDD PseudoU_synth_PUS1_PUS2 56 421 IPR041708 GO:0009982|GO:0031119
Bma04g00269 499 Gene3D - 42 162 IPR020094 GO:0003723|GO:0009982
Bma04g00269 499 Gene3D - 273 483 IPR020095 GO:0003723|GO:0009982
Bma04g00269 499 Pfam tRNA pseudouridine synthase 319 421 IPR020097 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bma04g00269 499 PANTHER TRNA PSEUDOURIDINE SYNTHASE 30 482 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00269 K06173 truA, PUS1; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] - csv:101219581 699.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00476 Bma-Chr3:3658419 Bma04g00269 Bma-Chr4:2210261 3.14E-29 dispersed
Bma07g00658 Bma-Chr7:11166936 Bma04g00269 Bma-Chr4:2210261 1.70E-09 transposed
Bma04g00232 Bma-Chr4:1995519 Bma04g00269 Bma-Chr4:2210261 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g144 . Blo12g00869 . Bda03g00305 . Bpe04g00267 Bma04g00269 . . . . Cma09g00077 . . . Cpe06g00041 . . . . . . . . . . . . . . . . Cone7ag1918 . . Lsi04g01786 Csa04g02676 . . . . . . . . . . Sed01g2458 . Cmo09g00076 . . . Car09g00067 . . Bhi09g02939 Tan01g5065 Cmetu07g1422 . Hepe01g2313 Mch11g0079 . Cla05g01587 Cam05g1696 Cec05g1697 Cco05g1748 Clacu05g1683 Cmu05g1573 Cre05g1690 . . . Cme07g00081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008390 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00269 Bma_Chr04 FPKM 7.697515 7.253713 7.769916 8.088859 9.047523 7.893136 9.461145 8.601048 8.795396 7.343316