Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00286 ATGGTATTTCAGTGGCTGGATTCAAATCCCAACTGTAGTGTTCGGTATATCGGGCTAAGTAGTTGGGACAAGCATGTAGGTTATAGAAATGTCAATGTATTACCACTTACACAAAATCATGTTTCTCTATGGAAGCATGTAGATAGCAGTGAGTTTGAAGGTGAGGACGATGGGGAAATAGAATTGGAAGATGAAGGCAGAAATTATGACAATTGGGGGCTGGAACATTTCCTTGAGAGTTGGGAATTGGCAGATATGTTTTTCACCGTTGGTTCAGAAGAAAGAATTGTACCTGCTCATAAGGCAATATTGGTAGCTTCTGGTAATTTTCCATTAGAGGATGTTATCAAGCTTCAGGGAGTGAACTATCCAGTTCTTCATGCTCTCCTTCAATATATATATACTGGTCAAACCCAGTTTCCTATTCCACACATCGAAGAGCTGTTAGATGAACTATATGGGGCTAAAATATTTACTAAGCTGGATTTGAAATCCGGGTATCATCAAATTAGAGTAAAAAAGGAAGATGTTTATAAGACGGCATTCTGTACTCACGAAGGGCACTATGAGTTTTTGGTTATGCCTGTGTTCGTGAGCTTGTTTTGGAAAGAACTGTGGCGATTACAGGGAACTACGTTGAAATTTAGTTATGCATACCATCCACAAACGGATGGTCAGTCAGAGGTTGTTAATCGAACCCCATTTCGAGCTGTCTATAAACGAGATCCACCTCCTCTGTTACAAGTTGATAATTCCAGCTCGGTTGTATCGGCAGTGGATGAACAATTGAAAGACAGGGATCAAGTTCTGGAACGTATCAAATCCCACCTCAATCGGGCACAACAGTTGATGATGCAGTCGGCGAACAAAAGAAGGAGAGATGTACAGTTCGAGGTGGGTGAAAAGGTTTGGCTGAAATTGCAACCTTACCGACAACGTTCGATTTCAGAGTCGCAAATCCTTTGTTTGCGAGATCTGGGTTTACAATTTGAATTGGCGACATTGGTAAATCAGTGCAAGCAAACCATTGAAAGATTTAAACTGAATAAAACTCTGTCATTAGACTCAAGTAAGAATGTAGAACTATCTTATCCGAGGGTTCAGCCTCATTGCTGTACTATTGCCCCTGCCCCCTATGAACTTCAGCTCAAACAATTGTACTTAACTGGCAAGCTCAGTGACTTAGCTATACATATTTGTGATGTTGGTTTCATTGCTCACGTCCATAAAATTATTCTTAGTTTATGGAGTGTGCCTTTTGCAAAGATGTTCACGAATGGAATGAGGGAAACAATATCGTCTGAGGTCTCTTTAGTGGATGTATCCCCAAAAGCTTTCAAGTTGATGCTTGAGTTCATGTATAGTGGGGAGCTCAGTGAGGAAGTCATTTCTAAGGATTCAAATGTATTATTGCTCCAACTTCTTTTATTGGCCGATCAATATGGAGTTACATTTCTTCATCGAGAATGCTGCAAAATTCTTTTAGAACATCTCTCAGAGGACCTGGTGTGTCCAATTCTCCAAGTTGTGTCATCAATACCATCTTGTAGACTGATTGAAGAAACGTGTGAAAGGAAGTTTGCAATGCATTTTGATTACTGTACAACTGCAAGTCTTGACTTCATCATGTTAGACGAGACAACTTTTGGCAATATCATTCAGCATCCAGATTTAACGGTGACATCAGAGGAAAAAGTTCTGAATGCAATCTTAACATGGGGGAATAAAACAGAGGAATTATGTGGGTGGGAGGCGGTGGATGAGCAGATGTTATATTCAACTCCTGAAATGTTTTTTGGGGAGAGGCTTCATTCTGTTCATGAATTGGTCCGATACGTAAGATTTCCGTTACTGCCATATGCATTGCTGGAGAAGGTGCGTATTTATGTAAATCGCATAACAAACAGATTTACTGACAAATTCGCTATTTGGGGGGGTGTTCATCGACGGGAATTAACTTTTGTTTTTCACCCATTATGTAGTGTGAGATTTCAATATAGGCGGTCTAGCTACAAGGAGCTCATGTACATTTGTGATGGAGACAGCAATGGAGTTCTGTTCTTTGCAGGCACATCATATGGACAGCATCTATGGGTCAATCCTGTTCTTTCAAAGAGAATCACAATCACCGCCAGCAGCCCCCATTCGAGGTTCACTGATCCGAAGGTTTTGGTCTCGAGAACTTACCAGGGAACATCTTTTGCCGGACCCCGCATTGAAGATGGACGGAATTGTTCATGGTGGATGATCGATATTGGAAAAGATCGTCAGCTCGTGTGCAACTACTACACGCTGAGACAAGACGGGTCCAGCGCATATATTAGACATTGGAATCTCCAGCAGGGGTCTTTGGATGGGAAAACTTGGACAAAATTGAGATCACATGAAAACGACCAAACGATGTGCAAATCGGGTCAGTTTGCATCATGGCCAATAACGGGACCAAACGCTCTGCTTCCATTCAGATTCTTCAGGGTTGTTCTTTCAGGCCCCACCACGGATGTTTCAAACCCCTGGAACTTCTGCATTTGCTACTTCGAACTCTACGGCTACTTCCGATGA 2562 41.73 MVFQWLDSNPNCSVRYIGLSSWDKHVGYRNVNVLPLTQNHVSLWKHVDSSEFEGEDDGEIELEDEGRNYDNWGLEHFLESWELADMFFTVGSEERIVPAHKAILVASGNFPLEDVIKLQGVNYPVLHALLQYIYTGQTQFPIPHIEELLDELYGAKIFTKLDLKSGYHQIRVKKEDVYKTAFCTHEGHYEFLVMPVFVSLFWKELWRLQGTTLKFSYAYHPQTDGQSEVVNRTPFRAVYKRDPPPLLQVDNSSSVVSAVDEQLKDRDQVLERIKSHLNRAQQLMMQSANKRRRDVQFEVGEKVWLKLQPYRQRSISESQILCLRDLGLQFELATLVNQCKQTIERFKLNKTLSLDSSKNVELSYPRVQPHCCTIAPAPYELQLKQLYLTGKLSDLAIHICDVGFIAHVHKIILSLWSVPFAKMFTNGMRETISSEVSLVDVSPKAFKLMLEFMYSGELSEEVISKDSNVLLLQLLLLADQYGVTFLHRECCKILLEHLSEDLVCPILQVVSSIPSCRLIEETCERKFAMHFDYCTTASLDFIMLDETTFGNIIQHPDLTVTSEEKVLNAILTWGNKTEELCGWEAVDEQMLYSTPEMFFGERLHSVHELVRYVRFPLLPYALLEKVRIYVNRITNRFTDKFAIWGGVHRRELTFVFHPLCSVRFQYRRSSYKELMYICDGDSNGVLFFAGTSYGQHLWVNPVLSKRITITASSPHSRFTDPKVLVSRTYQGTSFAGPRIEDGRNCSWWMIDIGKDRQLVCNYYTLRQDGSSAYIRHWNLQQGSLDGKTWTKLRSHENDQTMCKSGQFASWPITGPNALLPFRFFRVVLSGPTTDVSNPWNFCICYFELYGYFR 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2294487 2306011 - Bma018740.4 Bma04g00286 80655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00286 853 ProSiteProfiles BTB domain profile. 393 462 IPR000210 GO:0005515
Bma04g00286 853 CDD BTB_POZ_ZBTB_KLHL-like 392 459 - -
Bma04g00286 853 Gene3D - 194 291 IPR036397 GO:0003676
Bma04g00286 853 SUPERFAMILY DNA/RNA polymerases 137 195 IPR043502 -
Bma04g00286 853 PANTHER OS05G0345500 PROTEIN 302 853 - -
Bma04g00286 853 PANTHER OS05G0345500 PROTEIN 1 151 - -
Bma04g00286 853 SMART BTB_4 393 498 IPR000210 GO:0005515
Bma04g00286 853 SMART BTB_4 84 170 IPR000210 GO:0005515
Bma04g00286 853 SUPERFAMILY Ribonuclease H-like 195 240 IPR012337 -
Bma04g00286 853 Gene3D - 712 851 - -
Bma04g00286 853 ProSiteProfiles BTB domain profile. 84 142 IPR000210 GO:0005515
Bma04g00286 853 Pfam BTB And C-terminal Kelch 510 578 IPR011705 -
Bma04g00286 853 CDD RT_LTR 139 195 - -
Bma04g00286 853 Pfam BTB/POZ domain 383 497 IPR000210 GO:0005515
Bma04g00286 853 Pfam BTB/POZ domain 75 161 IPR000210 GO:0005515
Bma04g00286 853 SUPERFAMILY POZ domain 381 496 IPR011333 -
Bma04g00286 853 Gene3D Potassium Channel Kv1.1; Chain A 364 529 IPR011333 -
Bma04g00286 853 CDD BTB_POZ_ZBTB_KLHL-like 83 149 - -
Bma04g00286 853 SUPERFAMILY Galactose-binding domain-like 699 852 IPR008979 -
Bma04g00286 853 SMART BACK_2 504 627 IPR011705 -
Bma04g00286 853 SUPERFAMILY POZ domain 74 149 IPR011333 -
Bma04g00286 853 Gene3D Potassium Channel Kv1.1; Chain A 62 165 IPR011333 -
Bma04g00286 853 Gene3D - 530 637 - -
Bma04g00286 853 Pfam F5/8 type C domain 709 830 IPR000421 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00286 - - - pper:18788493 739.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00286 Bma-Chr4:2294487 Bma15g00242 Bma-Chr15:2432195 6.56E-18 dispersed
Bma05g01194 Bma-Chr5:51033970 Bma04g00286 Bma-Chr4:2294487 2.61E-06 dispersed
Bma01g01465 Bma-Chr1:26834703 Bma04g00286 Bma-Chr4:2294487 1.57E-06 transposed
Bma05g00482 Bma-Chr5:19884015 Bma04g00286 Bma-Chr4:2294487 3.52E-09 transposed
Bma12g00148 Bma-Chr12:2092616 Bma04g00286 Bma-Chr4:2294487 2.15E-09 transposed
Bma12g00424 Bma-Chr12:10021441 Bma04g00286 Bma-Chr4:2294487 6.51E-10 transposed
Bma04g00234 Bma-Chr4:2013905 Bma04g00286 Bma-Chr4:2294487 3.42E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g100 Blo01g01634 Blo12g00855 . Bda03g00318 Bpe02g00311 Bpe04g00279 Bma04g00286 . . . . Cma09g00057 . . . Cpe06g00025 . . . . . . . . . . . . . . . Cone4ag2017 Cone7ag1933 . . Lsi04g01803 Csa04g02697 . . . . . . . . . . Sed01g2438 . Cmo09g00058 . . . Car09g00049 . . Bhi09g02894 Tan01g5102 Cmetu07g0710 . Hepe01g2337 Mch11g0535 . Cla11g01820 Cam11g1886 Cec11g1911 Cco11g1918 Clacu11g2050 Cmu11g1855 Cre11g2260 . . Chy07g00388 Cme07g00059
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008391 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00286 Bma_Chr04 FPKM 0.089864 0.0 2.03546 0.976791 0.091508 0.294838 0.149738 0.188711 0.343017 0.11969