Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00287 ATGGATCCCAATAAGTACCGACCTTCCAGTGCTTTTGACTCCCCTTTTTTTACTACCAATTCTGGTGCCCCGGTGTGGAACAACAACTCATCCTTGACTATTGGAACTAGAGGTCCAATTCTTCTTGAGGATTATCATTTGCTGGAGAAACTTGCTAATTTTGATAGGGAGCGGATACCAGAACGTGTTGTCCATGCTAGAGGAGCCAGTGCAAAAGGATTCTTTGAGGTCACCCATGATATTTCTTCCCTTACTAGTGCTGATTTCCTTCGAGCTCCTGGAGTTCAAACACCTGTCATTGTTCGGTTCTCTACTGTCATCCATGAGCGAGCTAGCCCTGAAACCTTGAGAGATCCTCGAGGTTTCGCAGTGAAGTTTTACACCAGAGAGGGAAATTTTGATCTTGTGGGTAACAATTTCCCCGTCTTTTTCATCCGTGATGGGATGAAATTTCCTGACATGGTTCATGCTCTAAAACCCAATCCTAAGTCCCATATTCAGGAGAATTGGAGAATCCTCGACTTCTTTTCCCACCATCCTGAAAGCTTGCATATGTTTACCTTCCTATTTGATGACGTTGGTATTCCACAAGACTACAGACACATGGATGGCTCTGGTGTGAACACTTACACTTTGATAAACAAAGCTGGGAAATCCGTGTATGTGAAGTTCCATTGGAAACCAACCTGTGGAGTTAAAAATTTGTTAGAGGATGAAGCTATTCAGGTAGGAGGATCAAATCATAGCCATGCCACTAAGGATTTGTATGACTCGATTGCTGCTGGTGTCTACCCTGAGTGGAAACTTTTTATCCAGACAATCGATCCTGATCACGAAGATATGTATGACTTTGACCCACTAGATGTAACCAAGACCTGGCCTGAGGATATTATTCCCTTACAGCCTGTTGGCCGCTTGGTGTTGAACAAGAACATTGATAACTTCTTTGCAGAGAATGAACAACTTGCCTTCTGTCCTGCCCTGATAGTTCCTGGAGTTTACTATTCGGATGATAAACTCCTCCAGACCCGCATCTTTTCATATGCTGATACACAGAGGCACCGGCTTGGACCAAATTATCTGCAGCTTCCTCCAAATGCTCCCAAGTGTGCTCACCATAACAATCACCATGATGGTCTTATGAACTTTATGGAAAGAAAGGAGGAGGTCAATTACTTCCCTTCGAGATATGATCCTGTTCGCCATGCTGAGCGGTATCCCATTCCCACAGCTGTCTATAATGGAAGACGTGATAAGGTCATAATTGGCAAGGAGAATAACTTTAAGCAACCTGGGGAGAGATACCGGTCATTTGATCCAGAAAGGCAAGAACGATTTATCCACCGATGGGTTGATGCTTTATCCGACCCTCGTCTCACCCATGAAATCCGCAGCATCTGGATCTCCTACTGGTTTCAGGCTGACAAGTCTCTTGGTCAGAAGCTCACCACCCGTCTCAACGTGAGGCCGGGCATCTGA 1479 44.9 MDPNKYRPSSAFDSPFFTTNSGAPVWNNNSSLTIGTRGPILLEDYHLLEKLANFDRERIPERVVHARGASAKGFFEVTHDISSLTSADFLRAPGVQTPVIVRFSTVIHERASPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFTFLFDDVGIPQDYRHMDGSGVNTYTLINKAGKSVYVKFHWKPTCGVKNLLEDEAIQVGGSNHSHATKDLYDSIAAGVYPEWKLFIQTIDPDHEDMYDFDPLDVTKTWPEDIIPLQPVGRLVLNKNIDNFFAENEQLAFCPALIVPGVYYSDDKLLQTRIFSYADTQRHRLGPNYLQLPPNAPKCAHHNNHHDGLMNFMERKEEVNYFPSRYDPVRHAERYPIPTAVYNGRRDKVIIGKENNFKQPGERYRSFDPERQERFIHRWVDALSDPRLTHEIRSIWISYWFQADKSLGQKLTTRLNVRPGI 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2312251 2315807 + Bma018741.1 Bma04g00287 80656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00287 492 Gene3D Catalase core domain 15 490 - -
Bma04g00287 492 ProSitePatterns Catalase proximal active site signature. 54 70 IPR024708 GO:0004096
Bma04g00287 492 PIRSF Catalase_clade1-3 7 490 IPR024711 GO:0004096|GO:0006979|GO:0020037
Bma04g00287 492 Pfam Catalase 18 398 IPR011614 GO:0004096|GO:0020037
Bma04g00287 492 SUPERFAMILY Heme-dependent catalase-like 13 489 IPR020835 GO:0020037
Bma04g00287 492 Pfam Catalase-related immune-responsive 424 485 IPR010582 -
Bma04g00287 492 PRINTS Catalase signature 31 54 IPR018028 GO:0004096|GO:0006979|GO:0020037
Bma04g00287 492 PRINTS Catalase signature 331 357 IPR018028 GO:0004096|GO:0006979|GO:0020037
Bma04g00287 492 PRINTS Catalase signature 115 132 IPR018028 GO:0004096|GO:0006979|GO:0020037
Bma04g00287 492 PRINTS Catalase signature 94 112 IPR018028 GO:0004096|GO:0006979|GO:0020037
Bma04g00287 492 PRINTS Catalase signature 299 326 IPR018028 GO:0004096|GO:0006979|GO:0020037
Bma04g00287 492 PRINTS Catalase signature 134 152 IPR018028 GO:0004096|GO:0006979|GO:0020037
Bma04g00287 492 SMART Catalase_2 18 401 IPR011614 GO:0004096|GO:0020037
Bma04g00287 492 CDD catalase_clade_1 16 486 - -
Bma04g00287 492 PANTHER CATALASE 2 492 IPR018028 GO:0004096|GO:0006979|GO:0020037
Bma04g00287 492 ProSitePatterns Catalase proximal heme-ligand signature. 344 352 IPR002226 GO:0020037
Bma04g00287 492 ProSiteProfiles catalase family profile. 14 492 IPR018028 GO:0004096|GO:0006979|GO:0020037
Bma04g00287 492 PANTHER CATALASE 2 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00287 K03781 katE, CAT, catB, srpA; catalase [EC:1.11.1.6] - csin:114278349 946.421
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02409 Bma04g00287 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02410 Bma-Chr1:81675304 Bma04g00287 Bma-Chr4:2312251 0 dispersed
Bma01g02409 Bma-Chr1:81654999 Bma04g00287 Bma-Chr4:2312251 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g98 Blo01g01636 Blo12g00854 . Bda03g00319 Bpe02g00309 Bpe04g00280 Bma04g00287 Bma01g02409 Cmo05g00996 Cmo12g00616 Cma01g02012 Cma09g00054 Car01g01582 Car12g00658 . Cpe06g00023 Cpe07g00589 Bhi04g01227 . . . Hepe08g1506 . . Cla08g00942 Cam08g1392 Cec08g0974 Cco08g1097 Clacu08g1099 . Cre08g0883 . . . . Lsi04g01805 Csa04g02699 . Cme03g01342 . . Bda11g00972 . . . . . Sed08g1839 . . Cma12g00678 Cma05g00977 Car05g00858 Car09g00047 Cpe11g00788 Cpe02g00036 Bhi09g02890 Tan01g5104 Cmetu03g1562 . Hepe01g2339 Mch11g0058 . Cla11g01822 Cam11g1888 Cec11g1913 Cco11g1920 Clacu11g2052 Cmu11g1857 Cre11g2263 Lsi08g00787 . Chy07g00390 Cme07g00057
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001453 3 3 2 3 3 1 4 2 1 3 1 2 4 3 1 2 1 3 4 2 3 2 2 2 2 1 2 5 2 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00287 Bma_Chr04 FPKM 12.033259 12.5518 6.580614 7.732338 1.478548 1.909422 2.104226 1.718869 2.015675 2.277764