Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00290 ATGAAAGGAGGTAAATCTAAGTCCGAGTCGAGGAAGGCTGAACCGAAGCTTGGGGTGAATAAGAAAGCTGCGCCAAAACCCGCGAGGAAACCAAGCAAAAAGGCAGCGAAAGATCCAGACAAACCTAAGAGGCCCTCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTTAGGAAGAAGTTTAACGAAGAGAATCCAAATAATAAATCAGTATCTGCTGTTGGAAAGGCTGCTGGGCAGAAATGGAAATCTATGTCTGAAGCTGATAAAGCTCCTTATGTTGCAAAGGCAGAGAAAAGAAAGCTAGATTATGAAAAGGAAATGAAGGCCTATAACAAGAAGCAGGCTGCAGGTCCCAAGTCTGCGGAGGAGGATGAATCTGAGAAATCAGTGTCTGAGGTGAATGACGATGATGATGGAGAAGATGGCAGTGGAGAGGTTAGTTGA 444 44.82 MKGGKSKSESRKAEPKLGVNKKAAPKPARKPSKKAAKDPDKPKRPSSAFFVFMEEFRKKFNEENPNNKSVSAVGKAAGQKWKSMSEADKAPYVAKAEKRKLDYEKEMKAYNKKQAAGPKSAEEDESEKSVSEVNDDDDGEDGSGEVS 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2333172 2334366 + Bma018744.1 Bma04g00290 80659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00290 147 Coils Coil 93 113 - -
Bma04g00290 147 MobiDBLite consensus disorder prediction 60 91 - -
Bma04g00290 147 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 146 IPR031061 -
Bma04g00290 147 Pfam HMG (high mobility group) box 42 111 IPR009071 -
Bma04g00290 147 SUPERFAMILY HMG-box 28 116 IPR036910 -
Bma04g00290 147 MobiDBLite consensus disorder prediction 1 48 - -
Bma04g00290 147 MobiDBLite consensus disorder prediction 128 147 - -
Bma04g00290 147 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 146 - -
Bma04g00290 147 MobiDBLite consensus disorder prediction 1 19 - -
Bma04g00290 147 CDD HMGB-UBF_HMG-box 42 108 - -
Bma04g00290 147 SMART hmgende2 41 112 IPR009071 -
Bma04g00290 147 MobiDBLite consensus disorder prediction 109 127 - -
Bma04g00290 147 MobiDBLite consensus disorder prediction 109 147 - -
Bma04g00290 147 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 42 111 IPR009071 -
Bma04g00290 147 Gene3D High mobility group box domain 37 115 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00290 K25507 HMGBP; high mobility group B protein, plant - csv:101203891 171.014
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00290 Bma-Chr4:2333172 Bma09g00232 Bma-Chr9:10001507 5.54E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g85 . Blo12g00851 . Bda03g00323 Bpe02g00306 Bpe04g00284 Bma04g00290 . . . Cma01g02021 Cma09g00049 Car01g01588 . . Cpe06g00019 . . . . . . . . . . . . . . . Cone4ag2024 Cone7ag1941 Cone17ag1458 . Lsi04g01812 Csa04g02709 . . . . Bda11g00975 . . . . . Sed01g2431 Cmo01g02078 Cmo09g00052 . . . Car09g00041 . . Bhi09g02874 Tan01g5116 Cmetu06g2583 . . Mch11g0052 . Cla11g01828 Cam11g1895 Cec11g1920 Cco11g1929 Clacu11g2059 Cmu11g1864 Cre11g2271 . . Chy07g00398 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002005 3 3 2 2 2 0 4 1 0 2 2 1 3 2 2 3 0 5 2 1 2 2 2 2 2 2 2 2 1 2 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57131 PF00505 HMG_box 2.10E-23 CL0114 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00290 Bma_Chr04 FPKM 2.13972 2.079393 2.026431 1.46595 4.477362 3.289884 3.704093 2.610313 2.164412 1.868996