Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00291 ATAATGGAGTGCCAGAATCAGCAGCAAAACCGAGAAGATCAACTACCAATGCAAATGCCATTTGATCATCAGTTGCAGAACCCCGATGGGTTGTTCGTGAAGGTGATGACGGACGAGCAAATGGAGCTTCTCCGGCGGCAGATCTCTGTCTACGCTTCCATTTGTGAACAGCTTGTCGAGATGCACAAGGCTATGACCGCCCAACAGGACCATACTGGGAATCCATATTATGATCCAATGACGGCATCTAGTGGGCACAAGATTACGGCTCGGCAAAGGTGGACGCCAACGCCTATGCAGCTTCAAATACTCGAGCATATTTTTGACGAAGGAAATGGCGCTCCAAGTAAGCAGAAGATTAAGGAGATAACTATCGACCTTTCACAACACGGGCAAATCTTGGAAGCAAATGTGTATAATTGGTTCCAGAACAGAAGAGCACGCAGTAAAAGAAAGCAGTCAGCTTCAATCCCTAACAATGCAGATTCAGAAGTGGAAACAGAAGTAGATTCGCCAAAGGCAGTGGGTGCCCCATCATTTGAGAATCATGCACATAGAAGTGGTGATGTCTACGGGAAATCCGAGTTGGGCGTTGAAATGCAGGGCTTGGATGGACGCAACCTGTTTTTCACTTGA 636 47.01 IMECQNQQQNREDQLPMQMPFDHQLQNPDGLFVKVMTDEQMELLRRQISVYASICEQLVEMHKAMTAQQDHTGNPYYDPMTASSGHKITARQRWTPTPMQLQILEHIFDEGNGAPSKQKIKEITIDLSQHGQILEANVYNWFQNRRARSKRKQSASIPNNADSEVETEVDSPKAVGAPSFENHAHRSGDVYGKSELGVEMQGLDGRNLFFT 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2338187 2339251 + Bma018745.1 Bma04g00291 80660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00291 211 ProSiteProfiles 'Homeobox' domain profile. 87 152 IPR001356 GO:0003677
Bma04g00291 211 SUPERFAMILY Homeodomain-like 90 155 IPR009057 -
Bma04g00291 211 PANTHER - 2 205 - -
Bma04g00291 211 Pfam Homeodomain 91 151 IPR001356 GO:0003677
Bma04g00291 211 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 205 IPR044559 GO:0003700
Bma04g00291 211 MobiDBLite consensus disorder prediction 149 188 - -
Bma04g00291 211 CDD homeodomain 91 153 IPR001356 GO:0003677
Bma04g00291 211 Gene3D - 92 156 - -
Bma04g00291 211 SMART HOX_1 89 156 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00291 - - - bhj:120085747 259.225
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02412 Bma04g00291 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00291 Bma-Chr4:2338187 Bma06g00075 Bma-Chr6:1177395 5.72E-44 dispersed
Bma10g00996 Bma-Chr10:23492870 Bma04g00291 Bma-Chr4:2338187 2.05E-148 transposed
Bma01g02412 Bma-Chr1:81704465 Bma04g00291 Bma-Chr4:2338187 3.01E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g02412 BCT 1 216 Wox Gene Family AT4G35550 53.4 9.0e-60 227.3
Bma04g00291 BCT 30 171 Wox Gene Family AT4G35550 67.1 6.5e-50 194.5
Bma10g00996 . 30 176 Wox Gene Family AT4G35550 65.1 6.1e-48 188.0
Bma05g00042 BCT 5 151 Wox Gene Family AT1G46480 66.7 4.6e-50 194.5
Bma01g00657 BCT 3 148 Wox Gene Family AT1G46480 61.9 1.5e-45 179.5
Bma05g00042 BCT 5 151 Wox Gene Family AT1G46480 66.7 4.6e-50 194.5
Bma01g00657 BCT 3 148 Wox Gene Family AT1G46480 61.9 1.5e-45 179.5
Bma01g02412 BCT 1 216 Wox Gene Family AT4G35550 53.4 9.0e-60 227.3
Bma04g00291 BCT 30 171 Wox Gene Family AT4G35550 67.1 6.5e-50 194.5
Bma10g00996 . 30 176 Wox Gene Family AT4G35550 65.1 6.1e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57132 PF00046 Homeodomain 4.40E-16 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00291 Bma_Chr04 FPKM 0.0 0.0 11.806376 10.879812 10.213111 9.74613 10.390623 0.534288 0.298364 0.417554