Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00292 ATGTTTTCTGAAACGCCCGGATCAAGCCCTAACCCTAAAAATGTGTATCCCATCTGTGGGATTCAGGTGGAGTTTCCCTACCGCCCGTACGGGTCGCAGCTCGCATACATGGGCAGAGTTATTAGCACCCTCGATCGAGCCCAGCGAGAGGGCCATTGTCACGCCTTGCTCGAGTCTCCCACTGGGACCGGGAAATCCCTTTCACTTTTGTGCTCCACTCTCGCCTGGCAGCAAAATCATAAGATGAAGAATCAATATGGGAATCTGTCGCAGTCGAAGCCAGCTCCGGAGGCTTTGACCGATCCTTTGGCTTATGGCGGTGGATTTATTCCCGAAGTGCAGTCCTCAATATCTGAAAGCGTAGAGCCATCCCATCCAGCCACAAACAACAAAGCTCAAAAGAAGAAGATAACGCACACCATATACTATGCCTCGAGGACACATTCACAGATTTCTCAAGTGGTTCGAGAATATAGAAAAACTTCTTATCGGGTACCAATGGCAGTTTTGGCATCAAGGAAACATTACTGCACGAACAAACATATTAAAGGGAAAGAGAATGTGGACGAAGAATGTAAGTCACTTTTAAAGAACCGGGAGGGAGGATGTTTCGAGTTCAAGGGGATATATGTTTCTTTAACGAGCAGAAATGCGCACAAGGTCAAAAGCCATCCATCTCTTCAAAAAGGAGGCTGCTACGAGGCTCATGACATAGAAGATCTTGTTAAAGTTGGACAAGTTGTAAAAGGTTGTTCATATTATGCAGCACGTTCAATGGCTGAGGATGCACAGTTGGTTTTCTGCCCATATAACTACATTATTAATCCAGTTATTCGAGGGGCAATGGAAGTTGATATTAAGGGTGCAATTGTGATTCTTGATGAAGCTCACAACATAGAAGATATTTCTCGTGCAGCTGGCAGTGTGGATGTTGAGGAAGATGCCTTATATAAATTGCAGATGGAGTTGGGACAATTATGTGCTGTTGATGCTTTAGTTTACCAACCATTGTATGAAATGACGCAGGACCTTTTAAGTTGGATTGAGAGACGTAAAAGCTCATTAGAGAAGCATGAATATCAGCACTATGTCTCCAGTTGGACTGGAGATAAAGCATTAAGAGAGCTTCAAGAGGCTAATATTTCTCAACAGTGCTTTCCAATCTTGTTGGAATGTGCAACAAAGGCAGTTAAAGCAGCTACAGACACCGAATCAGAGATAACACATTTGAGTGGGGTGTCTGTTATAATACTGGAAGGCATTTATGGTACAGGATTGTTCTCCTCATTGACTTATTTCTTCTCGAGAAATGGGTCGCACATCTATGATTATCAGCTCTCCTTACAACGTCATGTGAAGAAAGATTTTGGAAAGAGATTGGGTGGTTGGACACAAACTTTGAGTTTGTGGTGCTTGAATCCTGCAGTAGTGTTCAGAGACATCACTGAACTATCATTATCTGTTATTTTAACATCTGGGACTCTCTCTCCAATGAATTCATTCTCATCTGAGCTAGGAGTTCAATTCGGGACTTCTCTGGAAGCTCCACACGTGATTGATGTTGAATCTCAGGTCTGGCCAGCTATTATCTCCACTGGTGCAGGAAACTATCCACTGAATGCCAGTTATAAAACAGCAAATGGGTATGCCTTTCAGGATGCCGTAGGTAAATCGCTAGAAGAGATTTTCCTTGTTGTTCCAGGTGGCTGTCTTGTGTTCTTCCCAAGTTATAAACTGATGGAGAAATTATGCAATCGTTGGTCTGACACAGGTCAATGGTCAAAGTTGAGCTCCAATAAATTCCTTTTTGTTGAGCCAAGAGGAGGAAGTCAGGAAGATTTAGACTCCACTTTGAAAGGTTATTATGACTGTATTCGTCAAGGTATTGCACCTGTTACTGGGAAGAAGAAACGGGTGAAGAAAGTGAAAATTAATCACTCTGATGTGAACGATCTGGACAATTCTAAGAAAGGAGCTGCCTTCTTTGCAGTTTGCCGAGGAAAGATTTCTGAAGGAGTTGACTTTTCTGATGATAATGCAAGAGTGATAATTGTTGGCGTTCCTTTTCCTAACATAAATGATATTCAAGTGAGTTTGAAGAAGAAATACAATGACACTTACAAATCATCAAAAAACCTATTGAGTGGTGGTGACTGGTACTGTCAACAGACTTTCCGAGCTTTAAATCAAGCTGCAGGACGCTGCATAAGGCACAGATTTGACTTTGGAGCAATCATTTTATTAGATGAACGATTTCAGGATGAAAGGAACAAAACGTATATATCTAAGTGGCTGAGGAAATCTATCAAACAGTTTGACAACTTTGATCAATCAATGGCAGAATTAAAATCATTTTTCAATGATGAGCGGATTGGAAAAAGTAAGGACGACATTACTCAGAATTATGATGCAACTATCAAAACTATCCCCTGTGCTAATCAAAGTAAAAGGTTTAGGAAGATAGATGAAAAGTGTGATAAGTCGGAGGATTGTGGTCCGAAAATGATGTCTGAGCTAGAGTATGGTTCCCAGTTTACTATGTCAAAGTCTCAAAATAGAATTGAATTTCAGTTGTCCGTGCAGGCAACTGAGGACACTAATCCTTGCACGAATATAATCGACTTAGAATGCGGTTATGAGGAAGAATCAAGATATCATGAGTCTCTACCTCTTGCGCTTCAACATGACGACCCAGAGATCTCCATTGTTAAAGAAACCACTTCCATGGATGCCAATATCAGAAAAACTACAGCAGGATCCATCTCGAGGGACGAGGATTCCTCATTAACATTAGTTGAGGTCTCTCCTGAGTCTCCCGATGTTTTATCCTACCATTCTATTTCTGTCACTAATCCAAGAACCCAGCAGTCAATAGTAGATACCCCTGAAAGACATTTGGCAGCCAATGGGCCAAGCCTGATGCCTGAAATAGAATCATCTATGAATATGAGTGTAAATTCATACGGGCAGAAAAAGAGAAGGATTCCACGTTCACTTTTGGAAAATCTTGTTCAAACAAAGTGTGATATTATTGAAGCGAAAGCTCCTGGATATACTGATATCACAAGAAGCTTCTTAAAAGGGAAAAGTACAAATGGTCGAATTGAATTCGGTAATGAAACTAGTTCCACAGAACAGAGCTCCAGGAGATCTCCTATCGGTGATTCGCTTTCAACAAACAAAAAATTTTTTAACGTGTCTTCTAGTCCTGGTCTCGACAAGAGATTAGAAATCTCTTGCTCGCTTTGCAGAAGCCCACTGGGTCTTCAGGAAAACCATTTGACTGTAATGTGCTCAGTCGTGATACTCTTGAACCGAACGTCTGAAGGTGCAGGACAGGGGATTTGGTGTGCAGAGGATGGCTGCGTATTCAATACTATTTTCTGCCCTTTCTGCCGCAAACCTGACAATTGTCTGGGTGTACAGATTATGGCCACTAACGTTTTAAACGTTCAGTTACTTGATAGGGTACGCTTCCTTAAACGATTATGA 3492 41.61 MFSETPGSSPNPKNVYPICGIQVEFPYRPYGSQLAYMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTLAWQQNHKMKNQYGNLSQSKPAPEALTDPLAYGGGFIPEVQSSISESVEPSHPATNNKAQKKKITHTIYYASRTHSQISQVVREYRKTSYRVPMAVLASRKHYCTNKHIKGKENVDEECKSLLKNREGGCFEFKGIYVSLTSRNAHKVKSHPSLQKGGCYEAHDIEDLVKVGQVVKGCSYYAARSMAEDAQLVFCPYNYIINPVIRGAMEVDIKGAIVILDEAHNIEDISRAAGSVDVEEDALYKLQMELGQLCAVDALVYQPLYEMTQDLLSWIERRKSSLEKHEYQHYVSSWTGDKALRELQEANISQQCFPILLECATKAVKAATDTESEITHLSGVSVIILEGIYGTGLFSSLTYFFSRNGSHIYDYQLSLQRHVKKDFGKRLGGWTQTLSLWCLNPAVVFRDITELSLSVILTSGTLSPMNSFSSELGVQFGTSLEAPHVIDVESQVWPAIISTGAGNYPLNASYKTANGYAFQDAVGKSLEEIFLVVPGGCLVFFPSYKLMEKLCNRWSDTGQWSKLSSNKFLFVEPRGGSQEDLDSTLKGYYDCIRQGIAPVTGKKKRVKKVKINHSDVNDLDNSKKGAAFFAVCRGKISEGVDFSDDNARVIIVGVPFPNINDIQVSLKKKYNDTYKSSKNLLSGGDWYCQQTFRALNQAAGRCIRHRFDFGAIILLDERFQDERNKTYISKWLRKSIKQFDNFDQSMAELKSFFNDERIGKSKDDITQNYDATIKTIPCANQSKRFRKIDEKCDKSEDCGPKMMSELEYGSQFTMSKSQNRIEFQLSVQATEDTNPCTNIIDLECGYEEESRYHESLPLALQHDDPEISIVKETTSMDANIRKTTAGSISRDEDSSLTLVEVSPESPDVLSYHSISVTNPRTQQSIVDTPERHLAANGPSLMPEIESSMNMSVNSYGQKKRRIPRSLLENLVQTKCDIIEAKAPGYTDITRSFLKGKSTNGRIEFGNETSSTEQSSRRSPIGDSLSTNKKFFNVSSSPGLDKRLEISCSLCRSPLGLQENHLTVMCSVVILLNRTSEGAGQGIWCAEDGCVFNTIFCPFCRKPDNCLGVQIMATNVLNVQLLDRVRFLKRL 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2340673 2350066 - Bma018746.2 Bma04g00292 80661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00292 1163 CDD SF2_C_XPD 523 752 - -
Bma04g00292 1163 Gene3D - 535 782 IPR027417 -
Bma04g00292 1163 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 19 365 IPR014013 GO:0005524
Bma04g00292 1163 SMART deadxpd 21 333 IPR006554 GO:0003678|GO:0016818
Bma04g00292 1163 Gene3D - 27 342 IPR027417 -
Bma04g00292 1163 MobiDBLite consensus disorder prediction 1034 1056 - -
Bma04g00292 1163 PANTHER FANCONI ANEMIA GROUP J PROTEIN 12 1099 - -
Bma04g00292 1163 Pfam Helicase C-terminal domain 560 767 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Bma04g00292 1163 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 12 1099 IPR045028 -
Bma04g00292 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 748 IPR027417 -
Bma04g00292 1163 SMART Cxpdneu3 577 754 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Bma04g00292 1163 Pfam DEAD_2 143 316 IPR010614 GO:0003677|GO:0003678|GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00292 K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein [EC:5.6.2.3] - qsu:112023586 1486.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00292 Bma-Chr4:2340673 Bma09g00929 Bma-Chr9:48675306 1.48E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g81 . Blo12g00850 . Bda03g00325 . Bpe04g00285 Bma04g00292 . . . . Cma09g00046 . . . Cpe06g00016 . . . . . . . . . . . . . . . Cone4ag2025 . . . Lsi04g01816 Csa04g02713 . . . . . . . . . . Sed13g2203 . Cmo09g00048 . . . Car09g00038 . . Bhi09g02869 Tan01g5121 Cmetu07g0880 . Hepe01g2348 Mch11g0049 . Cla11g01831 Cam11g1898 Cec11g1923 Cco11g1933 Clacu11g2062 Cmu11g1867 Cre11g2275 . . Chy07g00402 Cme07g00047
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007710 1 2 1 1 1 0 1 0 0 2 1 1 1 2 2 1 0 1 1 1 2 1 1 2 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00292 Bma_Chr04 FPKM 306.629089 307.801514 1.401684 2.020674 5.138822 4.215438 4.246205 0.080237 0.0 0.0