Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00294 ATGGATTATTCGCGTACATTTACATTGGTAGAGGGAAATTACAACAAAGACAATGGTTCAGCCGCACAAGATGAGGATGCCAATGACTTGAATAATATAAAGCAAATGAACAATGGGAAACCTCCACGGCATCTCTCCATAATGCGCCATAGTATTAGCTCAATGAAGCTGATTGGCCCTACTGATTTGAGTTCAGATACTGCGTTCGACGAGAGTAAGTTACCAGATGAAAAGACAGAATTTGTACCTGTTTTCAGATCAGGAAGTTGTGCTGAAAGAGGACCTAAACAGTATATGGAGGATGAACACATTTGTATCGATGATCTCTTTGAACAAATAGGTCCAATCTCTGAGATCATGTCTCCTTGGTCTTTTTATGGGGTGTTTGACGGTCATGGCGGTACAGATGCAGCATCATTTGTGAGAAATAATATCCTCAGATTCACAGTTGAGGATTCTGATTTTCCCGTTAGTATGGAGAAAGCAATTAAAAGTGCTTTTCTAAAAGCTGATTATGCATTTGCTGACACTAGCTCCTTTGATGTTTCCTCTGGTACGACCGCCCTAACTGCCTTTATCTTGGGGAGATCACTGATAATTGCCAATGCTGGTGATTGTCGAGCAGTTTTGGGAAGGCGGGGTCGAGCAATTGAAATGTCAAAAGACCACAAACCCAACTGCCAATCAGAAAGACAGAGAATTGAGAAACTTGGTGGAGTAATTTATGATGGTTATCTCAATGGCCAGCTATCTGTTTCTCGGGCCATAGGAGATTGGCACATGAAAGGTGCTAAAGGTCAGGCATGCCCATTGAGTGCTGAGCCAGAGTTGCAAGAAATGCTCTTGACGGAGGATGATGAGTTTTTAATAATGGGATGTGATGGGCTGTGGGATGTAATGAGCAGTCAGTGTGCTGTCACTATGGCAAGGAAAGAGCTAATGGTCCACAATGACCCTGAAAGATGTTCAAGAGAGTTGGTGAGAGAGGCTCTCAAGCGCAACACATGTGATAATTTGACAGTCATTATGATCTGCTTTTCTCCCGACCCTCCCCCTCGAATAGAGATACCTCCATCACGAGTGAGGAGGAGTATATCGGCGGAGGGTCTGAATCTGTTGAAAGGTGTATTGGACTGTAATTGA 1143 43.31 MDYSRTFTLVEGNYNKDNGSAAQDEDANDLNNIKQMNNGKPPRHLSIMRHSISSMKLIGPTDLSSDTAFDESKLPDEKTEFVPVFRSGSCAERGPKQYMEDEHICIDDLFEQIGPISEIMSPWSFYGVFDGHGGTDAASFVRNNILRFTVEDSDFPVSMEKAIKSAFLKADYAFADTSSFDVSSGTTALTAFILGRSLIIANAGDCRAVLGRRGRAIEMSKDHKPNCQSERQRIEKLGGVIYDGYLNGQLSVSRAIGDWHMKGAKGQACPLSAEPELQEMLLTEDDEFLIMGCDGLWDVMSSQCAVTMARKELMVHNDPERCSRELVREALKRNTCDNLTVIMICFSPDPPPRIEIPPSRVRRSISAEGLNLLKGVLDCN 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2356598 2358717 - Bma018748.1 Bma04g00294 80663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00294 380 CDD PP2Cc 85 346 IPR001932 -
Bma04g00294 380 PANTHER PROTEIN PHOSPHATASE 2C 1 368 IPR015655 GO:0004722|GO:0006470
Bma04g00294 380 Gene3D - 70 349 IPR036457 -
Bma04g00294 380 ProSiteProfiles PPM-type phosphatase domain profile. 86 346 IPR001932 -
Bma04g00294 380 SMART PP2C_4 76 344 IPR001932 -
Bma04g00294 380 Pfam Protein phosphatase 2C 87 338 IPR001932 -
Bma04g00294 380 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 368 - -
Bma04g00294 380 ProSitePatterns PPM-type phosphatase domain signature. 125 133 IPR000222 GO:0043169
Bma04g00294 380 SUPERFAMILY PP2C-like 80 347 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02414 Bma04g00294 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01261 Bma-Chr1:17053757 Bma04g00294 Bma-Chr4:2356598 1.97E-36 dispersed
Bma04g00294 Bma-Chr4:2356598 Bma04g00107 Bma-Chr4:839888 2.28E-46 dispersed
Bma02g00034 Bma-Chr2:353468 Bma04g00294 Bma-Chr4:2356598 2.82E-117 transposed
Bma02g00942 Bma-Chr2:49321058 Bma04g00294 Bma-Chr4:2356598 4.33E-72 transposed
Bma09g00376 Bma-Chr9:32498586 Bma04g00294 Bma-Chr4:2356598 5.93E-95 transposed
Bma11g00622 Bma-Chr11:9801234 Bma04g00294 Bma-Chr4:2356598 4.18E-103 transposed
Bma12g01239 Bma-Chr12:45430399 Bma04g00294 Bma-Chr4:2356598 2.63E-33 transposed
Bma13g00101 Bma-Chr13:1054087 Bma04g00294 Bma-Chr4:2356598 1.56E-100 transposed
Bma01g02414 Bma-Chr1:81713453 Bma04g00294 Bma-Chr4:2356598 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00294 K14803 - qsu:112023621 605.905