Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00302 ATGGACGAGGGAAGAAGTAAATCTAGGAGAGACGATACGGTGAGGAAGGAGGAGCCAAAGAGGAGTCATCGTGACCGCAATGGGGATCGAGATAGGGATAGAGAAAAGGAGAGAAAAAGTGACCGTCATAGGGATAGAGAGAAGAGAGATCGTCGACGCTCTGAGAGAGAAAAGAGTTCTGATTCTGATGAGCAGCAATATGAGAAGGATGGAGACAAAGATAGAGAAAGTGAGAAACGTAGAGAAAGGGACATAGAAAAAACTCGCACTCAGGATGATGAAAGAGAAAGGGTAAAAAACAAGAAGAGGGATAGAGACATAGAAGAAAGAGTGAAGGACCGGGACAAAGAGAAGGAACGGGAAAAAGAAAAGAGAGAAAGAGAGAAGACAAAGGGAAAGGAAAGAGAAAGGGAAAGAGAAAAAAAGGAGCGAACGAGGGAAGATCGCGAGAGGGAGCGCGAAAGAGAAAAGGATAGGAGAGATCGCGAGAGAGACCGAGAAAAGGGAAGAGAAAAGGATAGAAAAAAGCATCGCGAAATTGAAAGTGATTATAGTGATGATAATAGTAAGGACCATGATATGAAACGGCGAAGGAGGGAAAATGGTGATTACAGGGACATAGAGCATGAAAGGAGTGGAAGCAAGTCAAGTAGACTCAAAGATGATGTTGTCGATAGCCCTATGAAAAAGAGTGGAGATGATGACTCATATAATCTCGATAAGCCATCACATGAAGAGGAATTGGAGAATGAGCAACTCAAGTTGGACGAGGAAATGGAAAAACGAAGGAGGAGAGTTCAGGAGTGGCAAAATTCGAGGAGATTGAAGGAAGAAGCCGAGAGAGAAAAGCAGGGTGAAGCAAATGATAATGAACCAAAGTCAGGTAAGACTTGGACCCTTGAAGGAGAATCTGATGATGATGATGAGAATGCTAAGCCTAGTGAAACTGATATGGATGTTGATGGCAATGACAAGCCCACCGAGGAAGAAGGGACAGATTTAGTGGTTGTTGATAGTAACAATAATGTTGATGCATTTCCATCAGTAGATGTTGATGGTGCTGCAGAGGATGATGAAATCGATCCTCTAGATGCTTTCATGAATTCCATGGTGTTGCCTGAAGTTGACAAGCTAAGCAATGTAAAGGCCCTTGCCGCTGTCACTGAGACAACTGTTGAGGTCAGGAATAAAGATAAACAAGAAGGTCAAAGCAATGGCAAGCAGACAAAGAGAGTTTCAAATAGATCGATGGGAAGAATAATTCCTGGAGAAGATTCCGATCCAGATTATGGAGACCTTGATAATGATGAGGACACATTAGAAGATGAGGACGATGATGAATTCATGAAACGGGTGAAGAAAACAAAAGCTGAGAAACTTTCTATAGTTGACCATTCAAAGATTGATTATATAACGTTCCGTAAAAGTTTTTATATAGAAGTGAAAGAGATTTCAAGGATGACTCTTGAGGAGGTTGTCGCTTACCGTAAGCAATTGGAGTTGAAGTTACATGGAAAAGATGCGCCAAAGCCTATCAAAACCTGGCATCAGACAGGACTTGCTAGTAAAATTTTGGAGACAATAAAGAAGCTTAATTATGAAAAGCCAATGCCAATACAAGCGCAGGCATTACCAATAATTATGAGTGGTCGAGATTGTATTGGTATAGCTAAAACTGGCTCTGGGAAAACCCTTGCATTTGTCTTACCAATGTTGCGGCATATCAAGGACCAACCTCCAGTTGTAGCTGGAGATGGACCCATTGGGCTAATTATGGCACCTACGAGGGAGCTAGTTCAACAGATCCACGCTGATATAAAAAAGTTTTCCAAGGCAATGGGGCTAAGGTGTGTACCTGTATATGGAGGTTCTGGAGTTGCCCAACAAATCAGTGAACTCAAGCGTGGCACGGAAATAGTTGTTTGTACTCCTGGAAGGATGATTGACATACTGTGCACAAGCGCAGGAAAGATAACAAATTTGCGCAGGGTTACTTATTTTGTTATGGATGAAGCTGACAGAATGTTTGACATGGGTTTTGAGCCTCAAATTACTCGAATTGTTCAGAATATTCGGCCAGATCGTCAGACTGTTCTCTTTTCTGCTACTTTTCCTCGTCAAGTTGAAATTTTGGCTCGAAAAGTGTTGAACAAGCCTGTGGAAGTACAAGTTGGTGGGAGGAGTGTTGTGAATAAGGACATAATGCAGTTGGTTGAAGTACGACCAGAAAATGAAAGATTTTTAAGGTTGTTGGAACTACTAGGTGAATGGTCCGAGAAAGGAAAAATTTTAATATTTGTCCACTCACAGGATAAGTGTGATGCTTTATTCAGGGATATGCTTAAGCATGGTTATCCATGCCTTTCTCTTCATGGGGCCAAGGATCAGATGGATCGTGAATCAACCATAGCTGATTTCAAGAGCAACGTCTGCAGTTTACTGATTGCAACAAGTATTGCTGCAAGGGGGTTAGATGTTAAGGAACTTGAGCTGGTGATTAATTTTGATGTTCCAAACCACTATGAAGACTACGTCCATCGTGTTGGTCGAACAGGACGAGCTGGCCGGAAGGGCTGTGCTATTACTTTTATCTCTGAGGAAGATGCAAGGTATGCCCCGGATCTTGTAAAAGCATTGGAATTATCTGAGCAGGTTGTACCTGATGACCTGAGAGCTCTTGCTGAAAGTTTTATGGTGAAGGTGAATCAGGGACTTGAGCAAGCCCATGGAACTGGTTACGGTGGTAGTGGTTTTAAATTTAACGAAGAGGAAGATGAAGTACGTAGGGCAGCAAAGAAAGCTCAGGCTAAAGAATATGGTTTTGAGGAAGATAAATCAGATTCTGATGATGAAGATGAAGGTGTCCGAAAGGCAGGTGGTGACATCTCTCAGCAGGCTGCATTAGCTCAGATAGCTGCTCTTGCCGCTGCTTCTAAAGTTACTGCCGCTTCAGTTCCAACAGCTGTTACTCCCCAACTGCTTCCTAATGGTGGACTACCTGTGCCTGGTGGTCTAGCATTACCATTAACATCTGCTGCTGTTCCAGGAGCCGGACTACCAGTTGTAAATGATGGGTCTGCGGCTCGGGTTGCATTGGCTGCTGCTATGAACTTGCAACACAACCTGGCCAAGATTCAAGCCAGTGCAATGCCTGAACACTACGAGGCAGAGCTGGAGATCAATGATTTCCCCCAGAATGCCCGATGGAAGGTTACACATAAGGAGACTTTGGGGCCAATTTCTGACTGGACAGGAGCTGCTATTACTACTAGGGGGCAGTATTTTCCCCCTGGGAGGATTGCTGGACCTGGAGACCGCAAGCTTTACTTGTTCATTGAAGGTCCTACTGAGCAATCTGTGAAGAGAGCTAAAGCTGAATTGAAACGTGTTTTGGAAGATATCACAAACCAGGCATTGTCACTACCAGGGGGATCTCAGCCAGGAAGATACTCAGTTGTTTAA 3462 43.47 MDEGRSKSRRDDTVRKEEPKRSHRDRNGDRDRDREKERKSDRHRDREKRDRRRSEREKSSDSDEQQYEKDGDKDRESEKRRERDIEKTRTQDDERERVKNKKRDRDIEERVKDRDKEKEREKEKREREKTKGKEREREREKKERTREDREREREREKDRRDRERDREKGREKDRKKHREIESDYSDDNSKDHDMKRRRRENGDYRDIEHERSGSKSSRLKDDVVDSPMKKSGDDDSYNLDKPSHEEELENEQLKLDEEMEKRRRRVQEWQNSRRLKEEAEREKQGEANDNEPKSGKTWTLEGESDDDDENAKPSETDMDVDGNDKPTEEEGTDLVVVDSNNNVDAFPSVDVDGAAEDDEIDPLDAFMNSMVLPEVDKLSNVKALAAVTETTVEVRNKDKQEGQSNGKQTKRVSNRSMGRIIPGEDSDPDYGDLDNDEDTLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYITFRKSFYIEVKEISRMTLEEVVAYRKQLELKLHGKDAPKPIKTWHQTGLASKILETIKKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHADIKKFSKAMGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSAGKITNLRRVTYFVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEVQVGGRSVVNKDIMQLVEVRPENERFLRLLELLGEWSEKGKILIFVHSQDKCDALFRDMLKHGYPCLSLHGAKDQMDRESTIADFKSNVCSLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQVVPDDLRALAESFMVKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSDDEDEGVRKAGGDISQQAALAQIAALAAASKVTAASVPTAVTPQLLPNGGLPVPGGLALPLTSAAVPGAGLPVVNDGSAARVALAAAMNLQHNLAKIQASAMPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQYFPPGRIAGPGDRKLYLFIEGPTEQSVKRAKAELKRVLEDITNQALSLPGGSQPGRYSVV 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2397562 2401023 - Bma018756.1 Bma04g00302 80671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00302 1153 MobiDBLite consensus disorder prediction 315 332 - -
Bma04g00302 1153 Pfam DEAD/DEAH box helicase 538 709 IPR011545 GO:0003676|GO:0005524
Bma04g00302 1153 MobiDBLite consensus disorder prediction 929 957 - -
Bma04g00302 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 724 IPR027417 -
Bma04g00302 1153 CDD DEADc_DDX46 502 723 - -
Bma04g00302 1153 Pfam Helicase conserved C-terminal domain 747 855 IPR001650 -
Bma04g00302 1153 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 513 541 IPR014014 GO:0003724
Bma04g00302 1153 Coils Coil 1117 1137 - -
Bma04g00302 1153 MobiDBLite consensus disorder prediction 427 445 - -
Bma04g00302 1153 Coils Coil 108 128 - -
Bma04g00302 1153 MobiDBLite consensus disorder prediction 395 447 - -
Bma04g00302 1153 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 668 676 IPR000629 -
Bma04g00302 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 660 893 IPR027417 -
Bma04g00302 1153 MobiDBLite consensus disorder prediction 929 943 - -
Bma04g00302 1153 CDD SF2_C_DEAD 734 864 - -
Bma04g00302 1153 MobiDBLite consensus disorder prediction 1 355 - -
Bma04g00302 1153 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 544 722 IPR014001 -
Bma04g00302 1153 SMART helicmild6 774 855 IPR001650 -
Bma04g00302 1153 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 749 894 IPR001650 -
Bma04g00302 1153 Coils Coil 241 265 - -
Bma04g00302 1153 MobiDBLite consensus disorder prediction 1 301 - -
Bma04g00302 1153 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 181 968 - -
Bma04g00302 1153 Gene3D - 466 721 IPR027417 -
Bma04g00302 1153 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 181 968 - -
Bma04g00302 1153 Coils Coil 135 166 - -
Bma04g00302 1153 Gene3D - 722 898 IPR027417 -
Bma04g00302 1153 SMART ultradead3 532 737 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00302 K12811 DDX46, PRP5; ATP-dependent RNA helicase DDX46/PRP5 [EC:3.6.4.13] - csv:101222147 1528.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00286 Bma04g00302 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00302 Bma-Chr4:2397562 Bma10g00949 Bma-Chr10:20365511 6.07E-138 dispersed
Bma04g01500 Bma-Chr4:51015632 Bma04g00302 Bma-Chr4:2397562 3.88E-08 dispersed
Bma04g00302 Bma-Chr4:2397562 Bma11g00266 Bma-Chr11:2354481 1.23E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1179 . . . . . . Bma04g00302 . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1487 . . . . . . Blo17g00228 . . Bda13g01542 . Bpe14g00323 . Bma02g00286 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005912 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 2 0 0 1 1 2 1 1 1 1 4 5 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00302 Bma_Chr04 FPKM 5.891942 7.139873 0.168859 0.107759 0.0 0.0 0.0 1.438627 1.692183 1.439315