Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00305 ATGGAATTTCACGAAGATGACGTTACTGAACATATTGACTGGAGTATTTTCTCCGATGAACTTCACGAGGGTGACGCTTTGTTGACCCCGGAGCCTCCAGTTTCGGACGATCCATCTTCGGGTGACACTTCCTCCGATCCTTCTCATTCTTCGGCTTCCTCGTGGGTCGACGAGCTCGAAAACTTGCTTATGCAGGAAGATGACAACGATGCTATTTCGGAAGCTACGAAGGAGTTCTGTGACACTTTTTTGGCTGATATACTTGTGGATTGTCCTGTAGAGGGTCCGGGTGATATCGTTGATTCCCCACTTTTTATGATTCCTTCTGCTTCAGATGATGGTAAGGTTTACAATTCGGATAAGGAGAACGTCAATGAAGCCAATGTCAATGATAAAGAGAGTGAAGAGGCAGACGCCGATGACCCCATCTCAAAGAAACGAAGAAGACAGCTGAGAAATAAGGATGCTGCATTGAGATCGAGGGAGAGGAAAAAGTCTTATGTGAAGGATCTAGAGATGAAGAGTAGGTATCTCGAAGGAGAATGCAGGAGATTGGGGCGTTTGCTTCAGTGTTGTTATGCTGAGAATCAAGCTTTACGTAATAATTTACAAATGGGCTTTGTGTCCGGTGCTTCCTTGGCCAAGCAGGAGTCTGCCGTGCTCTTGTTGGAATCCCTGCTGTTGGGTTCCCTGCTATGGTTAATGGGAGTCGTGTGCCTGTTCACTCTGCCCCAAATCCCCCAGCCAATTCCGGAAGCAGTGCCTCTGGAAATTGCAGTGGAAGATCCAGAAAAAGTGGGTCCAAGAGAAGGTGGAAGTAGAGACCTGGACCAATCTTTTGCAAGAAGTAGAAGATGCAAATCTGCGAAGATAAAGATGAGGCCTTTTCTTTTGGTTACTTGA 903 46.4 MEFHEDDVTEHIDWSIFSDELHEGDALLTPEPPVSDDPSSGDTSSDPSHSSASSWVDELENLLMQEDDNDAISEATKEFCDTFLADILVDCPVEGPGDIVDSPLFMIPSASDDGKVYNSDKENVNEANVNDKESEEADADDPISKKRRRQLRNKDAALRSRERKKSYVKDLEMKSRYLEGECRRLGRLLQCCYAENQALRNNLQMGFVSGASLAKQESAVLLLESLLLGSLLWLMGVVCLFTLPQIPQPIPEAVPLEIAVEDPEKVGPREGGSRDLDQSFARSRRCKSAKIKMRPFLLVT 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2420406 2422806 - Bma018759.1 Bma04g00305 80674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00305 300 MobiDBLite consensus disorder prediction 126 148 - -
Bma04g00305 300 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 143 203 IPR004827 GO:0003700|GO:0006355
Bma04g00305 300 SUPERFAMILY Leucine zipper domain 145 203 IPR046347 GO:0003700|GO:0006355
Bma04g00305 300 MobiDBLite consensus disorder prediction 22 54 - -
Bma04g00305 300 CDD bZIP_HY5-like 146 197 - -
Bma04g00305 300 Gene3D - 144 206 - -
Bma04g00305 300 SMART brlzneu 140 205 IPR004827 GO:0003700|GO:0006355
Bma04g00305 300 MobiDBLite consensus disorder prediction 36 54 - -
Bma04g00305 300 MobiDBLite consensus disorder prediction 126 161 - -
Bma04g00305 300 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 10 298 - -
Bma04g00305 300 PANTHER BZIP TRANSCRIPTION FACTOR 60 10 298 - -
Bma04g00305 300 Pfam bZIP transcription factor 145 200 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00305 - - - jre:109000523 258.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02425 Bma04g00305 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02425 Bma-Chr1:81883097 Bma04g00305 Bma-Chr4:2420406 1.64E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g32 Blo01g01654 Blo12g00839 . . Bpe02g00289 . Bma04g00305 Bma01g02425 . . . Cma09g00015 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02428 Csa04g02744 . . . . . . . . . . . . Cmo09g00014 . . . Car09g00014 . . . . . . . . . Cla11g01858 Cam11g1925 Cec11g1952 Cco11g1964 Clacu11g2090 Cmu11g1893 Cre11g2301 . . Chy07g00432 Cme07g00018
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012243 1 1 1 2 1 0 1 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 0 1 2 1 1 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57134 PF00170 bZIP_1 7.30E-07 CL0018 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00305 Bma_Chr04 FPKM 9.030392 11.256151 11.199791 12.250897 13.222924 11.847559 13.025038 7.56586 7.265325 6.811686