Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00309 ATGGAAGAAAAAGAAGAGGAAGACTCTACCTTAGTGTTTCGACAGTTGCAGGACTCTGTGAATGCCCATCCACATGATCCTTCTGTCCATTTTGATCTTGGGCTTTTCCTCTGGGAAAAAGGAACCGACAAGGAAAAATCGGCAGCGGCGGAGCATTTCTTAGAATCGGCCAAATTAAACCCTCAGAATGCCGCTGCTTTCAGATACCTGGGAGATTACTACGCCACTGTTATGTCAGATACCAATAGAGCCATTAAATGTTACCAAAGAGTTGTTTCCCTCAATCCTGACGACTCTCAGGCTGGGGAAGCTTTCTGTGATTTGTTGGACCGAGAGGGGAAAGTGAGTTTGGAAGGAGCAGTATGCAAAGAAGCTTCTGAAAAGTCACCTAGGGCTTTTTGGGCCTTCCGGAGATTGGGATACTTGCAGGTGCATCAAAATAAATGGCCTGAAGCTATTCAAAGTCTTCAACATGCTATTCGTGGCTATCTGAACTGTGCTGATCTGTGGGAAGCTTTGGGTCTTGCTTATCAACGACTCGGCAGGTTCACTGCAGCCATTAAGTCCTATGGGCGAGCCATCGAATTGGAAGATGACAAAGTATTTTCTTTGGTTGAAAGCGGAAACATTTTCTTGATGCTTGGCTCTTTTAAGAAAGGAGTCGAACATTTTCGAAAAGCTTTGGATATATCACCTCAAAATGTGTCTGCACTATTTGGGCTGTCTTCTGGGTTGCTTGGTATGGGAAAGGAATGTATTAAAGTGGGAGGATTCAGATGGGCTTCTTCAGTGTTAGAGGAAGCAAATGAAGTTTCAAAATTGGGTACTTGTTTAGCTGGAAATTCATCATGTATCTGGAAATTGTGCGGTGATATTCAGCTTATGTACGCAAAATATTTTCCGTGGCTAGAAGGAGGCCAAAATAAAGAAATGGATATAGAAGCTTTTAAGACTTCTATCCTTTCATGGAAGAAAACCTGTTTTACGGCTGCAATTTCAGCCAAACGTTCCTATCAGAAAGCTTTGCACTTGGCTCCATGGCAAGCTAATGCATACATAGATGTTGCAATCACTTCTGATGTTATTTTCTCTTTGGATAAGAGCTGTGGACCTGGCGTGAATTCTTGGTCGTTGCCAAAGAAGATGACTTTGGGTTCCTTGTTACTTGAAAGTGAGAATTGTGAGTTTTGGATTGTGTTGGGATGTCTATCTGATGATAACGCATTGAAGCAACATGCATTATTAAGGGGGCTTCAATTGAATGTCTCTTTAGCTGTAGCATGGGCGTATCTTGGGCAGCTTTACCGGAAACAAGGTAAAAAGCAATTGACAGTGCAAGCATTTGATAATGCCAGGAGTATTGATCCCTCTCTAGCAATACCGTGGGCAGGCATGTCAGCTGATTTCCATATTAGGGAGTTCACATCAGATGAGGCATTTGAGAGCTGTTTACGAGCTGTGCAGATATTGCCTGTTCCGGAATTCCAAATTGGTCTTGCTAAGCTTGCTCTTCAGTCTGGAAATCTTTCTTCTTCGCAGGTATATGGAGCCATCCAACAGGCCATACAACGTGCACCTTTCTATCCTGAATCTCATAATTTAAATGGACTAGTTTGTGAGGCACGAGCAGATTATCATTCTGCTGCATTATCGTACAGATTAGCGCGCTGGTCAATTATAAGTTCTTCTTACCACGATCCAAACTCTGATGTTATAGATGTATCAATTAATATAGCCAGATCACTATGTAAGGCAGGGAATGCACTCGATGCTTTGAAGGAGTGTGAAGATTTGAAAAATAAAGGAATGCTTGACGTTGAGGGATCACAAATATATGCTTTCTCTCTGTGGCAACTCGGTAAAAACAGCGAGGCCCTTGCTGTGGCAAGAAATATTGCTGCTAGTGTTTCTTCAATGGACAATTCTTCTCAGGCTACCGCTGTTAGTTTTATCTGTCGGTTGCTTTATTCAGCATCGGGATTGGATTCGACATTCAACAGCATTGAGAAAATGCCAAAGAAACTGTTTCAGAATTCAAAAGTTACTTTTATAGTGTCAGCTATTCATGTGTTTGACTGGAGTAATCGACTTGAATCCATTGTTTCAAGCAGCCGTTCTTCCCTTACTTCTCAAGAAGAAATTACCAGGATGCACTTTTTGATAGCACTTGGCAAACTGGTTAAACATGGATCAAAAGGCTGTCTGGGCTTTCAGAGTGGAGTGTCTCACCTCAGAAAATATCTGCATAGATACCCTAACAGTAGTTTACTAAGGAACCTTCTTGGTTACCTTCTGCTGTCCAAAGAAGATGGGAGTGATAGTCACACTGCTACTAGATGCTGCAGTCTATATACCTCTGACCAACTGGCTAAAGAAGGGTTAAAATCTGTTTATGAAATTCACGGTGCTGGAGCATTTTCGTGCTATGCAATTGGCAACAGCAATCCCAAGTTTACTTACGCTACATGTACATGCAAGGGCCAGAATAAAACTGGAGCTACATATGAACTGCAAAAATGGTTGCGGCGAGAGCCATGGAATTACAATGCTCGATACCTGCTGATACTGAATTATTTACAAAAGGCGCAGGAAGAGAAATTTCCTCATCATCTTTGTATTACACTTGAACGGCTTGTTACTGTGGCTCTTTCATACTATTCACACCCTGAGAAGGATAAGTCTTACCAATATCAAAAGTTTCAGATATTACTTTGTGCTTCAGAGATCAGTTTGCAAGATCGCAAGCTAATTGATTCCATCAACTTTGCCAAAAGTGCATCAGCTATCTTGCTTCCAGCTAGTTGTAGTTTCTTTGCACATTTGTCACTATGTAGAGCCTATGCTGCGGTGAATGATGCCATAAACCTTCAAATAGAATTCGCAAAATGTTTGGAGCTGAAGACAGATTATGACCTTGGTTGGATTTGTCTTAAATTCATTGAATCTCGATTCCTAAGTGATTCCAATCTCCTAGATATAATATTGAAAGACTACTTGAAAGAGATGAAGAATCCGCGTACCATTTCGACTGTCTTATTTAAACTGGTGGAAGGCTTGATAAGTATGTGGAAGCTTGATTTCATTGCTGCTGAAAAGTTGCTTGCTGAGTCTTCGTCATTGGCTTCGAATGAGACCTGCCTCTTAATTTGCCATGGATTAGCATGCATTAAACTTGCCAAAGAGTCCGGAAGCTCGCAATTTTTATTGGGTGCACTAAAGAGTCTTGCAAGAGCACAAGCAGCCTCTTTAATTCCCATACCAATCATCTCAGTCATGCTGGCTCAAGCAGAAGGAAGTCTCGGTTCAAAAGAAAAGTGGGAGAGAAACCTTCGATCTGAATGGTTCTCTTGGCCTCCAGAAAGGAGACCAGCTGAGCTCTTTCTTCAGATGCATTTGCTGGCAAAACAGTCAAAAGCAGAACCAGACCATTTCAGCATAGAGTTCTGTCAAAGTCCTGAGAAGTGGGTACTGCGGGCAATCCATACGAATCCTTCTTGTCCGAGATACTGGAAGGTTTTGCAAAAGCTTCTGGAATGA 3537 41.9 MEEKEEEDSTLVFRQLQDSVNAHPHDPSVHFDLGLFLWEKGTDKEKSAAAEHFLESAKLNPQNAAAFRYLGDYYATVMSDTNRAIKCYQRVVSLNPDDSQAGEAFCDLLDREGKVSLEGAVCKEASEKSPRAFWAFRRLGYLQVHQNKWPEAIQSLQHAIRGYLNCADLWEALGLAYQRLGRFTAAIKSYGRAIELEDDKVFSLVESGNIFLMLGSFKKGVEHFRKALDISPQNVSALFGLSSGLLGMGKECIKVGGFRWASSVLEEANEVSKLGTCLAGNSSCIWKLCGDIQLMYAKYFPWLEGGQNKEMDIEAFKTSILSWKKTCFTAAISAKRSYQKALHLAPWQANAYIDVAITSDVIFSLDKSCGPGVNSWSLPKKMTLGSLLLESENCEFWIVLGCLSDDNALKQHALLRGLQLNVSLAVAWAYLGQLYRKQGKKQLTVQAFDNARSIDPSLAIPWAGMSADFHIREFTSDEAFESCLRAVQILPVPEFQIGLAKLALQSGNLSSSQVYGAIQQAIQRAPFYPESHNLNGLVCEARADYHSAALSYRLARWSIISSSYHDPNSDVIDVSINIARSLCKAGNALDALKECEDLKNKGMLDVEGSQIYAFSLWQLGKNSEALAVARNIAASVSSMDNSSQATAVSFICRLLYSASGLDSTFNSIEKMPKKLFQNSKVTFIVSAIHVFDWSNRLESIVSSSRSSLTSQEEITRMHFLIALGKLVKHGSKGCLGFQSGVSHLRKYLHRYPNSSLLRNLLGYLLLSKEDGSDSHTATRCCSLYTSDQLAKEGLKSVYEIHGAGAFSCYAIGNSNPKFTYATCTCKGQNKTGATYELQKWLRREPWNYNARYLLILNYLQKAQEEKFPHHLCITLERLVTVALSYYSHPEKDKSYQYQKFQILLCASEISLQDRKLIDSINFAKSASAILLPASCSFFAHLSLCRAYAAVNDAINLQIEFAKCLELKTDYDLGWICLKFIESRFLSDSNLLDIILKDYLKEMKNPRTISTVLFKLVEGLISMWKLDFIAAEKLLAESSSLASNETCLLICHGLACIKLAKESGSSQFLLGALKSLARAQAASLIPIPIISVMLAQAEGSLGSKEKWERNLRSEWFSWPPERRPAELFLQMHLLAKQSKAEPDHFSIEFCQSPEKWVLRAIHTNPSCPRYWKVLQKLLE 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2444431 2454880 + Bma018763.1 Bma04g00309 80678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00309 1178 Pfam Tetratricopeptide repeat 172 234 - -
Bma04g00309 1178 SUPERFAMILY TPR-like 13 160 IPR011990 GO:0005515
Bma04g00309 1178 SMART tpr_5 27 63 IPR019734 GO:0005515
Bma04g00309 1178 SMART tpr_5 64 98 IPR019734 GO:0005515
Bma04g00309 1178 SMART tpr_5 201 234 IPR019734 GO:0005515
Bma04g00309 1178 SMART tpr_5 133 166 IPR019734 GO:0005515
Bma04g00309 1178 SMART tpr_5 425 458 IPR019734 GO:0005515
Bma04g00309 1178 SMART tpr_5 167 200 IPR019734 GO:0005515
Bma04g00309 1178 ProSiteProfiles TPR repeat profile. 167 200 IPR019734 GO:0005515
Bma04g00309 1178 Gene3D Tetratricopeptide repeat domain 4 274 IPR011990 GO:0005515
Bma04g00309 1178 ProSiteProfiles TPR repeat profile. 425 458 IPR019734 GO:0005515
Bma04g00309 1178 SUPERFAMILY TPR-like 130 555 IPR011990 GO:0005515
Bma04g00309 1178 SUPERFAMILY TPR-like 334 508 IPR011990 GO:0005515
Bma04g00309 1178 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Bma04g00309 1178 Gene3D Tetratricopeptide repeat domain 493 1082 IPR011990 GO:0005515
Bma04g00309 1178 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 37 13 867 - -
Bma04g00309 1178 Gene3D Tetratricopeptide repeat domain 331 492 IPR011990 GO:0005515
Bma04g00309 1178 ProSiteProfiles TPR repeat region circular profile. 167 199 - -
Bma04g00309 1178 SUPERFAMILY TPR-like 515 865 IPR011990 GO:0005515
Bma04g00309 1178 PANTHER SUPERKILLER 3 PROTEIN-RELATED 13 867 IPR039226 GO:0006401|GO:0055087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00309 K12600 SKI3, TTC37; superkiller protein 3 - qsu:112024589 1543.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00309 Bma-Chr4:2444431 Bma01g01208 Bma-Chr1:13914344 1.68E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g17 . Blo12g00835 . Bda03g00340 . Bpe04g00300 Bma04g00309 . . . . Cma09g00007 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0003 . Csa04g02754 . . . . . . . . . . . . Cmo09g00008 . . . Car09g00007 . . . . . . . . . . . . . . . . . . . Cme07g00008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007064 1 4 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 2 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00309 Bma_Chr04 FPKM 8.555555 4.990895 2.466181 2.250095 11.315267 13.121805 7.595079 2.484151 3.237507 2.684844