Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00311 ATGGTGAAGGACACCGAATACTACGACGTGCTTGGAGTCAGCCCCACCGCCTCCGAGGCCGAGATCAAGAAAGCATACTATTTGAAGGCGAGACAAGTCCATCCAGATAAAAATCCAAACGACCCACTTGCAGCACAAAATTTTCAGGTGTTGGGAGAGGCTTACCAGGTATTAAGTGATCCAGGACAACGACAGGCATATGATGCTTACGGAAAATCTGGAGTCTCGACCGACGCAATTATTGATCCAGCAGCCATCTTTGCCATGCTTTTTGGAAGTGAACTTTTTGAAGAATATATTGGCCAGCTGGCAATGGCATCAATGGCTTCATTAGATATTTTTTCGGAAGGGGAGCAGTTTGATGCCAAAAAGTTGCAGGAGAAAATGAGGATTGTCCAAAAGGAAAGAGAGGAAAAGCTTGCACAAATACTGAAAGATCGATTAAACCAGTATGTGCAAGGTAGTAAAGAAGAATTTATTAACCACGCTGAAGCTGAAGTAGCAAGACTTTCCAATGCAGCCTACGGCATTGACATGTTAAATACAATAGGCTACATATATGCCAGACAGGCAGCGAAAGAACTGGGGAAGAAAGCAATATATTTGGGCGTGCCCTTTGTTGCTGAGTGGTTTAGGAACAAAGGTCACTTTATAAAATCCCAAGTTACAGCTGCAACAGGCGCAATTGCTCTGATTCAGCTCCAGGAGGATATGAAAAAGCAACTTAGTGGAGAAGGAAACTACACCGAGGAAGAGCTTGAGTTATATGTTCAATCTCACAAGAAATTGATGATTGATTCCCTTTGGAAGCTTAATGTTGCCGATATTGAGGCTACACTTTCCCGTGTTTGTCAAATGGTACTCCATGATAATAATGTCAAGAAGGAAGAACTCCGAGCACGAGCAAAAGGGTTAAAGAATCTTGGTAAAATCTTTCAGAGGGTTAAGTCAACCAATGGAAATGAGAGTGAGGCTGCCGTAAATAGTGTCATGTCTAAGCTGAACGGAAGTGAAATGAGCAATGATACCTGTTCTCCACTTTCTTCTCTTAAATCTTCAGACTACGAAGAACCTTCTTATGATTTATACGCATCGCAGATTCCCTATGTAGAAGCCCACAACTTTCCAGGTGCAGAAATCAATAACTACTTGCCCAGACCTATAGCTCCACCCGGCGCACATAGGCAAACAGATAAGAATTAA 1203 42.64 MVKDTEYYDVLGVSPTASEAEIKKAYYLKARQVHPDKNPNDPLAAQNFQVLGEAYQVLSDPGQRQAYDAYGKSGVSTDAIIDPAAIFAMLFGSELFEEYIGQLAMASMASLDIFSEGEQFDAKKLQEKMRIVQKEREEKLAQILKDRLNQYVQGSKEEFINHAEAEVARLSNAAYGIDMLNTIGYIYARQAAKELGKKAIYLGVPFVAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKKQLSGEGNYTEEELELYVQSHKKLMIDSLWKLNVADIEATLSRVCQMVLHDNNVKKEELRARAKGLKNLGKIFQRVKSTNGNESEAAVNSVMSKLNGSEMSNDTCSPLSSLKSSDYEEPSYDLYASQIPYVEAHNFPGAEINNYLPRPIAPPGAHRQTDKN 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2460464 2466947 - Bma018765.1 Bma04g00311 80680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00311 400 PANTHER CHAPERONE PROTEIN DNAJ 10-LIKE ISOFORM X1 1 375 - -
Bma04g00311 400 SMART dnaj_3 5 63 IPR001623 -
Bma04g00311 400 CDD DnaJ 6 60 IPR001623 -
Bma04g00311 400 Coils Coil 122 142 - -
Bma04g00311 400 Pfam DnaJ domain 6 68 IPR001623 -
Bma04g00311 400 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Bma04g00311 400 Pfam X-domain of DnaJ-containing 133 327 IPR026894 -
Bma04g00311 400 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 375 - -
Bma04g00311 400 Gene3D DnaJ domain 1 83 IPR036869 -
Bma04g00311 400 PRINTS DnaJ domain signature 43 63 IPR001623 -
Bma04g00311 400 PRINTS DnaJ domain signature 63 82 IPR001623 -
Bma04g00311 400 PRINTS DnaJ domain signature 26 41 IPR001623 -
Bma04g00311 400 PRINTS DnaJ domain signature 8 26 IPR001623 -
Bma04g00311 400 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Bma04g00311 400 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00311 - - - csv:101221160 669.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02435 Bma04g00311 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00878 Bma-Chr1:8249397 Bma04g00311 Bma-Chr4:2460464 1.38E-114 dispersed
Bma04g00311 Bma-Chr4:2460464 Bma15g00451 Bma-Chr15:4905920 1.97E-13 dispersed
Bma12g00915 Bma-Chr12:40602182 Bma04g00311 Bma-Chr4:2460464 1.34E-10 dispersed
Bma05g00437 Bma-Chr5:14580891 Bma04g00311 Bma-Chr4:2460464 3.25E-133 transposed
Bma08g00560 Bma-Chr8:33714849 Bma04g00311 Bma-Chr4:2460464 4.96E-13 transposed
Bma01g02435 Bma-Chr1:81994324 Bma04g00311 Bma-Chr4:2460464 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1 . . . . . . Bma04g00311 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 . . . . . Bda11g00988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g3 Blo01g01664 . . Bda03g00342 Bpe02g00277 Bpe04g00302 Bma04g00311 Bma01g02435 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 Csa04g02758 . . . . . Bda01g01580 Bpe02g01770 . . . . . . . . . . . . . . . . . . . Cla11g01868 Cam11g1938 Cec11g1964 . Clacu11g2104 Cmu11g1905 Cre11g2313 . . Chy07g00444 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00311 Bma_Chr04 FPKM 9.231061 9.095245 10.249553 6.816604 9.1023 10.540868 13.739722 6.746416 4.038163 3.386773