Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00312 ATGGAGTGGGTTAATGGAGTGAAATTAAATGAACAAGATGCTATCGAGAGACAAGGCTTAAATGTTCTAGATTTGGTGAACACAGGTATACAGTGCAGCCTCAGGCAGCTTCTTGAATACGGGTATTTTCATGCAGATCCTCATCCAGGCAATCTTTTGGCAACGCCAGATGGAAGGCTTGCATTTCTTGATTTTGGAATGATGAGCGAAACACCAGAGGAAGCAAGATCTGCAATTATTGGTCATGTTGTTCACATGGTTAATCGAGATTATGTAGCTATGGCTCGTGACTACTATACTCTAGAATTTCTAGCATCTGACGTAGATGTTACGCCAATTGTGCCAGCTCTTAGAAACTTCTTTGATAATGCACTTAATGCAACTGTGAGTGAACTGAATTTCAGAACGATAGTTGATGGTCTTGGAGCTGTATTTTATCAATATCCATTTACCATCCCTGCATATTATGCATTGATATTGAGATCACTTACTGTGCTTGAAGGTTTAGCACTTTATGCAGATCCTGATTTCAAGGTGGGGTAG 543 40.15 MEWVNGVKLNEQDAIERQGLNVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPDGRLAFLDFGMMSETPEEARSAIIGHVVHMVNRDYVAMARDYYTLEFLASDVDVTPIVPALRNFFDNALNATVSELNFRTIVDGLGAVFYQYPFTIPAYYALILRSLTVLEGLALYADPDFKVG 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2468837 2469744 - Bma018766.1 Bma04g00312 80681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00312 180 Pfam ABC1 atypical kinase-like domain 1 96 IPR004147 -
Bma04g00312 180 SUPERFAMILY Protein kinase-like (PK-like) 1 77 IPR011009 -
Bma04g00312 180 PANTHER CADMIUM-TRANSPORTING ATPASE-RELATED 1 179 - -
Bma04g00312 180 Gene3D Transferase(Phosphotransferase) domain 1 12 146 - -
Bma04g00312 180 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 1 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00312 K08869 ADCK, ABC1; aarF domain-containing kinase - csin:114268467 334.339
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02132 Bma04g00312 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00312 Bma-Chr4:2468837 Bma08g00943 Bma-Chr8:48423580 9.89E-30 dispersed
Bma01g02436 Bma-Chr1:82007053 Bma04g00312 Bma-Chr4:2468837 2.04E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g213 Blo01g01345 . Bda01g00706 . . . Bma04g00312 Bma01g02132 . . . Cma05g00634 . . Sed01g1309 . . Bhi04g01074 Tan02g2645 Cmetu03g0988 . Hepe10g0312 . Lcy13g1339 . . . . . . . Cone4ag1851 Cone7ag1756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01187 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007525 2 1 2 2 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00312 Bma_Chr04 FPKM 8.874791 9.39416 15.767112 16.708317 4.943797 4.949145 4.620866 11.463333 8.961052 8.67835